Wall clock time and date at job start Mon Mar 30 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30511 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48497 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47323 * 300.00230 * 3 2 1 6 6 H 1.48506 * 109.46991 * 60.00043 * 3 2 1 7 7 C 1.40399 * 119.99189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99305 * 179.97438 * 7 2 1 9 9 C 1.41721 * 120.00590 * 0.02562 * 7 2 1 10 10 O 1.21780 * 119.99893 * 359.97438 * 9 7 2 11 11 C 1.47843 * 120.00280 * 179.97438 * 9 7 2 12 12 N 1.32915 * 119.74808 * 0.02562 * 11 9 7 13 13 C 1.31403 * 121.66372 * 179.97438 * 12 11 9 14 14 C 1.38945 * 120.96508 * 359.97438 * 13 12 11 15 15 Cl 1.73595 * 120.29985 * 180.02562 * 14 13 12 16 16 C 1.38661 * 119.39406 * 0.02562 * 14 13 12 17 17 C 1.38806 * 118.47101 * 359.97438 * 16 14 13 18 18 F 1.35102 * 120.49808 * 179.97438 * 17 16 14 19 19 H 0.97007 * 119.99596 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.51239 * 180.27998 * 13 12 11 21 21 H 1.07998 * 120.76371 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 3.6991 1.3462 0.0006 5 1 1.8805 2.3964 -1.2124 6 1 1.8805 2.3964 1.2126 7 6 2.0069 -1.2160 -0.0005 8 1 3.0869 -1.2160 -0.0010 9 6 1.2983 -2.4433 -0.0016 10 8 0.0805 -2.4432 -0.0016 11 6 2.0374 -3.7237 -0.0028 12 7 3.3665 -3.7180 -0.0023 13 6 4.0611 -4.8334 -0.0027 14 6 3.4276 -6.0701 -0.0033 15 17 4.3623 -7.5329 -0.0032 16 6 2.0421 -6.1250 -0.0039 17 6 1.3326 -4.9320 -0.0033 18 9 -0.0184 -4.9377 -0.0044 19 1 -0.4850 0.8401 -0.0004 20 1 5.1401 -4.7883 0.0023 21 1 1.5269 -7.0742 -0.0047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596646.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:41 Heat of formation + Delta-G solvation = -80.230225 kcal Electronic energy + Delta-G solvation = -13130.894795 eV Core-core repulsion = 10332.451547 eV Total energy + Delta-G solvation = -2798.443247 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 229.005 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.94664 -41.11926 -38.63109 -37.66813 -34.87937 -33.53314 -31.89247 -29.08758 -25.66903 -24.58223 -22.18447 -19.13602 -18.78402 -18.17505 -17.75545 -16.93396 -16.63474 -15.86573 -15.16351 -14.98971 -14.92134 -14.17284 -14.12222 -13.94901 -13.34479 -12.98049 -12.67298 -12.48777 -12.27521 -12.00409 -11.04553 -10.90268 -10.83331 -9.85198 -9.72982 -8.44147 -7.14267 -0.55655 -0.09198 0.78674 1.34518 1.39614 1.59596 1.94860 2.20870 2.57884 2.92946 3.35477 3.54469 3.55518 3.58229 3.95365 4.33977 4.63810 4.71329 5.14599 5.38854 6.01533 6.54004 6.61122 6.75890 8.09317 8.38527 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.007549 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303528 B = 3708.121874 C = 4336.584107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.017 3.983 3 Si 1.002 2.998 4 H -0.245 1.245 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.099 0.901 9 C 0.354 3.646 10 O -0.579 6.579 11 C 0.050 3.950 12 N -0.432 5.432 13 C 0.102 3.898 14 C -0.060 4.060 15 Cl -0.020 7.020 16 C -0.099 4.099 17 C 0.061 3.939 18 F -0.126 7.126 19 H 0.287 0.713 20 H 0.207 0.793 21 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -9.264 -0.004 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.203 4.203 3 Si 0.820 3.180 4 H -0.168 1.168 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.533 4.533 8 H 0.117 0.883 9 C 0.254 3.746 10 O -0.472 6.472 11 C -0.086 4.086 12 N -0.143 5.143 13 C -0.060 4.060 14 C -0.089 4.089 15 Cl 0.009 6.991 16 C -0.125 4.125 17 C 0.038 3.962 18 F -0.105 7.105 19 H 0.097 0.903 20 H 0.224 0.776 21 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.676 -8.558 -0.002 12.917 hybrid contribution -0.705 -0.409 -0.002 0.815 sum 8.971 -8.967 -0.004 12.684 Atomic orbital electron populations 1.70089 1.10025 1.30369 1.30016 1.27419 0.95608 1.05829 0.91421 0.84896 0.79563 0.74374 0.79164 1.16788 1.18593 1.18601 1.21471 0.96537 0.91412 1.43908 0.88326 1.18553 0.88046 0.87056 0.80943 1.90537 1.15965 1.88451 1.52208 1.23470 0.91047 0.96574 0.97558 1.68033 1.05915 1.30303 1.10005 1.23676 1.02507 0.84940 0.94861 1.22071 0.91676 0.90316 1.04826 1.98381 1.71378 1.32821 1.96557 1.21697 0.93205 0.98117 0.99523 1.19116 0.78336 0.94767 1.03961 1.91526 1.28380 1.97158 1.93390 0.90275 0.77643 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.56 11.73 21.90 0.26 -45.30 14 2 C 0.02 0.92 5.50 85.42 0.47 1.39 14 3 Si 1.00 39.17 29.56 68.60 2.03 41.20 14 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.26 -9.68 7.11 99.48 0.71 -8.98 14 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 7 C -0.50 -28.67 9.01 23.66 0.21 -28.45 14 8 H 0.10 5.22 7.36 -2.91 -0.02 5.20 14 9 C 0.35 21.27 6.91 25.68 0.18 21.44 14 10 O -0.58 -39.04 13.86 -4.61 -0.06 -39.10 14 11 C 0.05 2.44 6.74 41.92 0.28 2.72 14 12 N -0.43 -17.97 9.43 -184.43 -1.74 -19.71 14 13 C 0.10 3.06 10.99 84.93 0.93 3.99 14 14 C -0.06 -1.61 6.36 22.54 0.14 -1.47 14 15 Cl -0.02 -0.40 28.98 -2.72 -0.08 -0.48 14 16 C -0.10 -3.06 9.96 22.51 0.22 -2.84 14 17 C 0.06 2.61 7.32 22.80 0.17 2.78 14 18 F -0.13 -6.09 15.55 44.97 0.70 -5.39 14 19 H 0.29 14.84 8.29 -92.70 -0.77 14.07 14 20 H 0.21 4.35 8.06 -2.91 -0.02 4.33 14 21 H 0.18 4.33 8.06 -2.91 -0.02 4.31 14 Total: -1.00 -72.57 224.99 5.00 -67.58 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.28 Total: 1.65 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 2.61 Total: -0.44 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -1.48 Total: -65.01 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.06 Total: -39.10 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.70 Total: -5.39 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -72.57 5.00 -67.58 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596646.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.653 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds