Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00098 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00366 * 3 2 1 5 5 H 1.48506 * 109.46851 * 30.00012 * 3 2 1 6 6 H 1.48497 * 109.47285 * 150.00133 * 3 2 1 7 7 C 1.37873 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00428 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47679 * 180.02562 * 9 7 2 11 11 N 1.39871 * 119.71857 * 269.97967 * 10 9 7 12 12 C 1.30363 * 121.02966 * 179.97438 * 11 10 9 13 13 C 1.41118 * 120.41289 * 359.75264 * 12 11 10 14 14 N 1.38476 * 120.30112 * 180.28206 * 13 12 11 15 15 C 1.38307 * 119.39776 * 0.52264 * 13 12 11 16 16 Cl 1.73599 * 120.49265 * 179.76138 * 15 13 12 17 17 C 1.34760 * 119.72148 * 89.99607 * 10 9 7 18 18 O 1.22150 * 120.21020 * 359.97438 * 17 10 9 19 19 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46661 * 60.00064 * 9 7 2 21 21 H 1.08999 * 109.46876 * 300.00654 * 9 7 2 22 22 H 1.08001 * 119.78803 * 180.02562 * 12 11 10 23 23 H 0.97001 * 119.99742 * 180.24099 * 14 13 12 24 24 H 0.97000 * 119.99869 * 0.23831 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.6532 -4.1400 -1.2153 12 6 3.5005 -5.1303 -1.2451 13 6 3.9874 -5.6903 -0.0448 14 7 4.8918 -6.7384 -0.0792 15 6 3.5493 -5.1861 1.1663 16 17 4.1249 -5.8576 2.6601 17 6 2.6372 -4.1205 1.1698 18 8 2.2399 -3.6549 2.2269 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 3.8351 -5.5217 -2.1944 23 1 5.2209 -7.1223 0.7486 24 1 5.1960 -7.0886 -0.9310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238610333.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = 20.071288 kcal Electronic energy + Delta-G solvation = -13576.748685 eV Core-core repulsion = 10938.407894 eV Total energy + Delta-G solvation = -2638.340791 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.28168 -37.19042 -36.44045 -35.12384 -33.30090 -31.52223 -29.86469 -27.28937 -24.38080 -23.12146 -21.81820 -18.64667 -17.14934 -16.93328 -16.56294 -15.69819 -15.01423 -14.84019 -14.23554 -13.66458 -13.14192 -12.79821 -12.41094 -11.88980 -11.57777 -11.10718 -10.98066 -10.86383 -10.71263 -10.52562 -10.20690 -9.69535 -9.10468 -8.49861 -8.12005 -7.73930 -6.11855 -4.16700 0.90538 2.27371 2.35897 2.98082 3.30327 3.36034 3.42074 3.50618 3.98996 4.41152 4.59922 4.97653 5.17070 5.26057 5.83875 6.15973 6.90494 6.98408 7.14482 7.28715 7.36343 7.82497 8.04412 8.33650 8.71224 8.85936 9.47000 10.97094 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.007837 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.472607 B = 3571.773278 C = 3842.454043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.253 3.747 10 N -0.382 5.382 11 N -0.162 5.162 12 C 0.013 3.987 13 C 0.245 3.755 14 N -0.844 5.844 15 C -0.231 4.231 16 Cl -0.045 7.045 17 C 0.521 3.479 18 O -0.526 6.526 19 H 0.266 0.734 20 H 0.053 0.947 21 H 0.065 0.935 22 H 0.188 0.812 23 H 0.406 0.594 24 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -13.740 -3.185 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.136 3.864 10 N -0.204 5.204 11 N 0.021 4.979 12 C -0.187 4.187 13 C 0.128 3.872 14 N -0.383 5.383 15 C -0.277 4.277 16 Cl -0.017 7.017 17 C 0.316 3.684 18 O -0.403 6.403 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.205 0.795 23 H 0.237 0.763 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.261 -12.703 -2.961 15.440 hybrid contribution 1.306 0.008 0.624 1.447 sum 9.567 -12.695 -2.337 16.067 Atomic orbital electron populations 1.69921 1.05978 1.27416 1.49730 1.24888 0.94966 0.99273 0.94663 0.86379 0.79792 0.82473 0.78130 1.20428 1.20892 1.19799 1.21245 0.93425 0.89888 1.52185 0.92202 1.19760 0.86379 0.80170 1.00104 1.50423 1.39329 1.30965 0.99661 1.74980 1.06544 1.05848 1.10537 1.23472 1.00626 0.97545 0.97021 1.18654 0.88215 0.87575 0.92765 1.42356 1.47622 1.36197 1.12089 1.21424 1.12562 1.07278 0.86467 1.98280 1.87417 1.83663 1.32302 1.16471 0.83150 0.83808 0.84998 1.90995 1.58850 1.61911 1.28504 0.92411 0.92877 0.91764 0.79493 0.76326 0.76535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 14 2 C 0.06 1.86 5.46 -17.82 -0.10 1.77 14 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 14 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 14 7 C -0.53 -15.32 9.38 -34.44 -0.32 -15.64 14 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 14 9 C 0.25 6.82 5.44 -5.20 -0.03 6.79 14 10 N -0.38 -8.90 3.49 -64.74 -0.23 -9.13 14 11 N -0.16 -3.08 11.53 30.81 0.36 -2.72 14 12 C 0.01 0.18 11.20 -17.08 -0.19 -0.01 14 13 C 0.24 3.34 6.78 -83.74 -0.57 2.77 14 14 N -0.84 -7.18 8.99 32.50 0.29 -6.89 14 15 C -0.23 -4.21 6.39 -38.79 -0.25 -4.46 14 16 Cl -0.04 -0.73 27.25 -51.86 -1.41 -2.14 14 17 C 0.52 12.14 7.47 -15.50 -0.12 12.03 14 18 O -0.53 -14.23 16.19 4.78 0.08 -14.16 14 19 H 0.27 7.38 8.31 -40.82 -0.34 7.05 14 20 H 0.05 1.43 8.14 -51.93 -0.42 1.01 14 21 H 0.06 1.88 7.40 -51.93 -0.38 1.50 14 22 H 0.19 1.51 8.06 -52.49 -0.42 1.09 14 23 H 0.41 3.30 7.52 -40.82 -0.31 3.00 14 24 H 0.41 1.95 8.84 -40.82 -0.36 1.59 14 LS Contribution 239.82 15.07 3.61 3.61 Total: -1.00 -34.43 239.82 -4.60 -39.03 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -1.44 Total: -2.24 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.57 Total: 3.23 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 1.16 Total: -44.37 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.14 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -34.43 -4.60 -39.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238610333.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.102 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds