Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00098 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00366 * 3 2 1 5 5 H 1.48506 * 109.46851 * 30.00012 * 3 2 1 6 6 H 1.48497 * 109.47285 * 150.00133 * 3 2 1 7 7 C 1.37873 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00428 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47679 * 180.02562 * 9 7 2 11 11 N 1.39871 * 119.71857 * 269.97967 * 10 9 7 12 12 C 1.30363 * 121.02966 * 179.97438 * 11 10 9 13 13 C 1.41118 * 120.41289 * 359.75264 * 12 11 10 14 14 N 1.38476 * 120.30112 * 180.28206 * 13 12 11 15 15 C 1.38307 * 119.39776 * 0.52264 * 13 12 11 16 16 Cl 1.73599 * 120.49265 * 179.76138 * 15 13 12 17 17 C 1.34760 * 119.72148 * 89.99607 * 10 9 7 18 18 O 1.22150 * 120.21020 * 359.97438 * 17 10 9 19 19 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46661 * 60.00064 * 9 7 2 21 21 H 1.08999 * 109.46876 * 300.00654 * 9 7 2 22 22 H 1.08001 * 119.78803 * 180.02562 * 12 11 10 23 23 H 0.97001 * 119.99742 * 180.24099 * 14 13 12 24 24 H 0.97000 * 119.99869 * 0.23831 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.6532 -4.1400 -1.2153 12 6 3.5005 -5.1303 -1.2451 13 6 3.9874 -5.6903 -0.0448 14 7 4.8918 -6.7384 -0.0792 15 6 3.5493 -5.1861 1.1663 16 17 4.1249 -5.8576 2.6601 17 6 2.6372 -4.1205 1.1698 18 8 2.2399 -3.6549 2.2269 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 3.8351 -5.5217 -2.1944 23 1 5.2209 -7.1223 0.7486 24 1 5.1960 -7.0886 -0.9310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238610333.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -8.225853 kcal Electronic energy + Delta-G solvation = -13577.975742 eV Core-core repulsion = 10938.407894 eV Total energy + Delta-G solvation = -2639.567847 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.77912 -38.67517 -37.78304 -36.52774 -35.24828 -33.23696 -31.27839 -29.16847 -25.96985 -24.81207 -23.43230 -19.98782 -18.89361 -18.42740 -18.20352 -16.82687 -16.71266 -16.60267 -15.92647 -15.17554 -14.53712 -14.52449 -14.02674 -13.61145 -13.50174 -12.94169 -12.69066 -12.40451 -12.26621 -12.24401 -11.86585 -11.65969 -10.79907 -10.68202 -9.75048 -9.04090 -8.28943 -6.43572 -0.41560 0.93610 1.02094 1.36243 1.40124 1.45750 1.52902 2.34464 2.47328 2.49667 3.01950 3.36154 3.78628 3.91024 4.66354 4.80734 4.96108 5.17895 5.22782 5.62794 5.89439 5.97067 6.59653 6.64981 6.78781 7.13400 7.26416 8.80052 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.007837 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.472607 B = 3571.773278 C = 3842.454043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.273 3.727 10 N -0.411 5.411 11 N -0.205 5.205 12 C 0.060 3.940 13 C 0.284 3.716 14 N -0.800 5.800 15 C -0.276 4.276 16 Cl -0.036 7.036 17 C 0.507 3.493 18 O -0.592 6.592 19 H 0.272 0.728 20 H 0.041 0.959 21 H 0.022 0.978 22 H 0.259 0.741 23 H 0.415 0.585 24 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -15.370 -5.234 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.067 0.933 9 C 0.154 3.846 10 N -0.231 5.231 11 N -0.018 5.018 12 C -0.141 4.141 13 C 0.160 3.840 14 N -0.338 5.338 15 C -0.322 4.322 16 Cl -0.008 7.008 17 C 0.306 3.694 18 O -0.475 6.475 19 H 0.081 0.919 20 H 0.059 0.941 21 H 0.039 0.961 22 H 0.274 0.726 23 H 0.247 0.753 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 11.011 -14.410 -5.068 18.830 hybrid contribution 0.661 0.187 1.124 1.318 sum 11.672 -14.223 -3.944 18.817 Atomic orbital electron populations 1.70031 1.07458 1.28637 1.50089 1.25838 0.95932 1.02999 0.93889 0.85318 0.78103 0.77788 0.79011 1.18447 1.19975 1.20039 1.21464 0.93025 0.91418 1.52708 0.93284 1.19041 0.86780 0.81469 0.97328 1.49959 1.40439 1.31407 1.01280 1.74994 1.09695 1.08813 1.08320 1.24746 0.96151 0.93865 0.99362 1.18599 0.87029 0.87170 0.91152 1.42424 1.44042 1.32985 1.14355 1.21034 1.14381 1.08176 0.88644 1.98264 1.87111 1.83166 1.32214 1.17148 0.83522 0.84647 0.84102 1.90922 1.61623 1.64417 1.30498 0.91939 0.94096 0.96052 0.72566 0.75294 0.73325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.45 13.29 21.45 0.28 -56.16 14 2 C 0.01 0.78 5.46 84.65 0.46 1.25 14 3 Si 0.97 45.89 29.54 68.60 2.03 47.92 14 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 14 5 H -0.27 -12.46 7.11 99.48 0.71 -11.75 14 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 14 7 C -0.55 -33.18 9.38 25.60 0.24 -32.94 14 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 14 9 C 0.27 15.74 5.44 85.63 0.47 16.21 14 10 N -0.41 -19.94 3.49 -476.79 -1.66 -21.60 14 11 N -0.20 -7.52 11.53 -56.44 -0.65 -8.17 14 12 C 0.06 1.35 11.20 85.62 0.96 2.31 14 13 C 0.28 6.58 6.78 38.82 0.26 6.85 14 14 N -0.80 -8.82 8.99 -51.09 -0.46 -9.28 14 15 C -0.28 -9.84 6.39 22.78 0.15 -9.69 14 16 Cl -0.04 -1.13 27.25 -2.72 -0.07 -1.20 14 17 C 0.51 24.65 7.47 84.74 0.63 25.29 14 18 O -0.59 -34.44 16.19 -5.81 -0.09 -34.53 14 19 H 0.27 15.41 8.31 -92.71 -0.77 14.63 14 20 H 0.04 2.37 8.14 -2.38 -0.02 2.35 14 21 H 0.02 1.38 7.40 -2.39 -0.02 1.37 14 22 H 0.26 2.03 8.06 -2.91 -0.02 2.01 14 23 H 0.41 4.52 7.52 -92.71 -0.70 3.83 14 24 H 0.43 0.84 8.84 -92.71 -0.82 0.02 14 Total: -1.00 -83.56 239.82 2.29 -81.27 By element: Atomic # 1 Polarization: -7.27 SS G_CDS: -0.25 Total: -7.52 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 3.17 Total: 9.27 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.49 Total: -95.21 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.09 Total: -34.53 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -83.56 2.29 -81.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238610333.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.048 kcal (2) G-P(sol) polarization free energy of solvation -83.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds