Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00213 * 2 1 4 4 C 1.52999 * 109.47155 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46907 * 65.00334 * 4 3 2 6 6 C 1.46954 * 111.00074 * 66.20301 * 5 4 3 7 7 C 1.53050 * 109.36289 * 183.18990 * 6 5 4 8 8 N 1.46958 * 109.36185 * 301.59084 * 7 6 5 9 9 C 1.46898 * 111.00248 * 183.18896 * 8 7 6 10 10 C 1.46963 * 110.89838 * 59.31282 * 8 7 6 11 11 C 1.46957 * 110.99447 * 189.99822 * 5 4 3 12 12 H 1.09003 * 109.49340 * 296.79487 * 11 5 4 13 13 C 1.50700 * 109.48979 * 56.84755 * 11 5 4 14 14 H 1.07994 * 119.99934 * 5.60131 * 13 11 5 15 15 C 1.37885 * 119.99917 * 185.60300 * 13 11 5 16 16 N 1.31506 * 119.99882 * 198.09446 * 15 13 11 17 17 Si 1.86802 * 119.99754 * 18.10031 * 15 13 11 18 18 H 1.48501 * 109.46495 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47317 * 60.00024 * 17 15 13 20 20 H 1.48505 * 109.46996 * 299.99270 * 17 15 13 21 21 H 1.08999 * 109.47720 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47198 * 300.00184 * 1 2 3 23 23 H 1.09002 * 109.47421 * 59.99703 * 1 2 3 24 24 H 1.08996 * 109.47196 * 60.00193 * 3 2 1 25 25 H 1.09007 * 109.47244 * 300.00383 * 3 2 1 26 26 H 1.08996 * 109.46990 * 305.00067 * 4 3 2 27 27 H 1.09004 * 109.47003 * 184.99740 * 4 3 2 28 28 H 1.08997 * 109.48913 * 303.15432 * 6 5 4 29 29 H 1.08995 * 109.49264 * 63.21693 * 6 5 4 30 30 H 1.08994 * 109.49189 * 61.56099 * 7 6 5 31 31 H 1.09001 * 109.48582 * 181.63295 * 7 6 5 32 32 H 1.09006 * 109.46941 * 63.95401 * 9 8 7 33 33 H 1.08992 * 109.47806 * 183.95754 * 9 8 7 34 34 H 1.09006 * 109.46951 * 303.96050 * 9 8 7 35 35 H 1.08993 * 109.50834 * 180.73108 * 10 8 7 36 36 H 1.09002 * 109.46753 * 60.66452 * 10 8 7 37 37 H 0.97002 * 120.00230 * 354.86359 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9768 0.5626 -1.2562 6 6 3.6982 1.4375 -2.4037 7 6 4.0986 0.7222 -3.6961 8 7 5.5249 0.3731 -3.6380 9 6 5.9664 -0.2488 -4.8935 10 6 5.8042 -0.5015 -2.4904 11 6 5.4031 0.2135 -1.1980 12 1 5.9956 1.1216 -1.0860 13 6 5.6504 -0.6965 -0.0225 14 1 4.8191 -1.0596 0.5636 15 6 6.9380 -1.0655 0.3048 16 7 7.1468 -2.1106 1.0752 17 14 8.3858 -0.0806 -0.3460 18 1 9.6525 -0.6781 0.1475 19 1 8.2832 1.3227 0.1285 20 1 8.3726 -0.1035 -1.8308 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8514 0.5681 0.8409 27 1 3.9785 2.1764 0.0889 28 1 2.6340 1.6717 -2.4324 29 1 4.2712 2.3594 -2.3057 30 1 3.5062 -0.1858 -3.8078 31 1 3.9198 1.3804 -4.5464 32 1 5.8758 0.4711 -5.7070 33 1 7.0063 -0.5608 -4.7985 34 1 5.3442 -1.1181 -5.1067 35 1 6.8683 -0.7354 -2.4615 36 1 5.2314 -1.4237 -2.5886 37 1 6.3955 -2.5772 1.4738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250379502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -24.996745 kcal Electronic energy + Delta-G solvation = -17132.037251 eV Core-core repulsion = 14523.958193 eV Total energy + Delta-G solvation = -2608.079058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.75227 -37.31450 -34.81008 -32.89079 -30.17697 -29.90831 -26.97695 -25.60859 -24.88965 -23.46071 -21.27198 -20.75294 -18.78529 -17.52204 -16.09698 -15.94888 -15.08721 -14.74983 -14.41005 -14.19562 -14.01024 -13.53577 -13.33481 -13.24435 -12.30869 -11.88225 -11.73088 -11.61015 -11.46370 -11.27614 -11.08159 -10.85957 -10.69667 -10.27337 -10.07528 -9.95708 -9.54661 -9.27833 -8.76815 -8.19801 -7.74074 -7.25083 -6.43458 -4.01835 3.42498 3.47012 3.64432 4.19561 4.50647 4.58400 4.76483 5.28289 5.36953 5.46051 5.52960 5.57866 5.65975 5.66065 5.75463 5.82031 5.84228 5.91363 5.96476 6.14789 6.18480 6.21440 6.41164 6.46379 6.60929 6.69150 6.93422 7.20717 7.51313 7.60436 7.66999 7.86797 8.08467 8.37608 8.50561 9.04947 9.66035 10.97550 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.011291 C = 0.008190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.811430 B = 2479.294542 C = 3417.953527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.067 3.933 4 C 0.063 3.937 5 N -0.518 5.518 6 C 0.052 3.948 7 C 0.064 3.936 8 N -0.554 5.554 9 C 0.027 3.973 10 C 0.055 3.945 11 C 0.200 3.800 12 H -0.002 1.002 13 C -0.591 4.591 14 H 0.069 0.931 15 C 0.031 3.969 16 N -0.904 5.904 17 Si 1.042 2.958 18 H -0.286 1.286 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 7.221 -6.791 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.010 4.010 4 C -0.065 4.065 5 N -0.243 5.243 6 C -0.077 4.077 7 C -0.065 4.065 8 N -0.278 5.278 9 C -0.121 4.121 10 C -0.072 4.072 11 C 0.092 3.908 12 H 0.016 0.984 13 C -0.629 4.629 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.538 5.538 17 Si 0.871 3.129 18 H -0.212 1.212 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.605 7.081 -6.824 11.847 hybrid contribution -1.983 0.190 -0.036 1.993 sum -8.589 7.271 -6.860 13.179 Atomic orbital electron populations 1.22675 0.82844 1.02143 0.98972 1.88120 1.17816 1.27470 1.95030 1.22673 0.95089 0.84678 0.98574 1.22020 0.91125 0.97861 0.95536 1.62039 1.20990 1.40527 1.00746 1.22153 0.99124 0.94573 0.91809 1.22024 0.88632 0.98876 0.96933 1.62316 1.17028 1.44904 1.03599 1.22290 1.00375 0.97220 0.92251 1.22888 1.00797 0.94254 0.89279 1.19563 0.83160 0.94461 0.93593 0.98432 1.21986 0.94893 1.32485 1.13575 0.91341 1.25693 0.99990 0.95308 0.96466 1.70844 1.35328 1.15178 1.32416 0.84076 0.76098 0.75962 0.76765 1.21229 1.21112 1.19858 0.90150 0.94895 0.94848 0.94012 0.94139 0.88112 0.94650 0.91726 0.95314 0.94628 0.91731 0.92331 0.91813 0.96188 0.90603 0.94693 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.78 10.65 -35.23 -0.38 -7.15 16 3 C 0.07 1.11 6.00 37.16 0.22 1.34 16 4 C 0.06 1.26 5.13 -3.82 -0.02 1.24 16 5 N -0.52 -11.39 4.47 -227.88 -1.02 -12.41 16 6 C 0.05 0.96 5.41 -3.77 -0.02 0.94 16 7 C 0.06 1.14 5.62 -3.77 -0.02 1.12 16 8 N -0.55 -10.98 4.97 -242.75 -1.21 -12.18 16 9 C 0.03 0.44 9.63 60.06 0.58 1.02 16 10 C 0.06 1.29 4.58 -3.76 -0.02 1.27 16 11 C 0.20 4.94 1.53 -68.80 -0.11 4.84 16 12 H 0.00 -0.05 6.79 -51.93 -0.35 -0.40 16 13 C -0.59 -16.65 7.91 -34.44 -0.27 -16.92 16 14 H 0.07 2.11 7.00 -52.49 -0.37 1.75 16 15 C 0.03 0.90 5.33 -17.82 -0.10 0.80 16 16 N -0.90 -27.69 13.69 55.43 0.76 -26.94 16 17 Si 1.04 25.50 26.40 -169.99 -4.49 21.01 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.26 5.60 56.52 0.32 -5.95 16 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.61 6.28 -51.92 -0.33 0.28 16 26 H 0.10 2.32 6.10 -51.93 -0.32 2.01 16 27 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.06 1.05 6.25 -51.93 -0.32 0.73 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.83 4.81 -51.93 -0.25 1.58 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -31.21 285.71 -6.90 -38.11 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.24 Total: -1.92 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 1.36 Total: -2.83 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -1.46 Total: -51.53 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.38 Total: -7.15 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.49 Total: 21.01 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.21 -6.90 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250379502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.118 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds