Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00213 * 2 1 4 4 C 1.52999 * 109.47155 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46907 * 65.00334 * 4 3 2 6 6 C 1.46954 * 111.00074 * 66.20301 * 5 4 3 7 7 C 1.53050 * 109.36289 * 183.18990 * 6 5 4 8 8 N 1.46958 * 109.36185 * 301.59084 * 7 6 5 9 9 C 1.46898 * 111.00248 * 183.18896 * 8 7 6 10 10 C 1.46963 * 110.89838 * 59.31282 * 8 7 6 11 11 C 1.46957 * 110.99447 * 189.99822 * 5 4 3 12 12 H 1.09003 * 109.49340 * 296.79487 * 11 5 4 13 13 C 1.50700 * 109.48979 * 56.84755 * 11 5 4 14 14 H 1.07994 * 119.99934 * 5.60131 * 13 11 5 15 15 C 1.37885 * 119.99917 * 185.60300 * 13 11 5 16 16 N 1.31506 * 119.99882 * 198.09446 * 15 13 11 17 17 Si 1.86802 * 119.99754 * 18.10031 * 15 13 11 18 18 H 1.48501 * 109.46495 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47317 * 60.00024 * 17 15 13 20 20 H 1.48505 * 109.46996 * 299.99270 * 17 15 13 21 21 H 1.08999 * 109.47720 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47198 * 300.00184 * 1 2 3 23 23 H 1.09002 * 109.47421 * 59.99703 * 1 2 3 24 24 H 1.08996 * 109.47196 * 60.00193 * 3 2 1 25 25 H 1.09007 * 109.47244 * 300.00383 * 3 2 1 26 26 H 1.08996 * 109.46990 * 305.00067 * 4 3 2 27 27 H 1.09004 * 109.47003 * 184.99740 * 4 3 2 28 28 H 1.08997 * 109.48913 * 303.15432 * 6 5 4 29 29 H 1.08995 * 109.49264 * 63.21693 * 6 5 4 30 30 H 1.08994 * 109.49189 * 61.56099 * 7 6 5 31 31 H 1.09001 * 109.48582 * 181.63295 * 7 6 5 32 32 H 1.09006 * 109.46941 * 63.95401 * 9 8 7 33 33 H 1.08992 * 109.47806 * 183.95754 * 9 8 7 34 34 H 1.09006 * 109.46951 * 303.96050 * 9 8 7 35 35 H 1.08993 * 109.50834 * 180.73108 * 10 8 7 36 36 H 1.09002 * 109.46753 * 60.66452 * 10 8 7 37 37 H 0.97002 * 120.00230 * 354.86359 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9768 0.5626 -1.2562 6 6 3.6982 1.4375 -2.4037 7 6 4.0986 0.7222 -3.6961 8 7 5.5249 0.3731 -3.6380 9 6 5.9664 -0.2488 -4.8935 10 6 5.8042 -0.5015 -2.4904 11 6 5.4031 0.2135 -1.1980 12 1 5.9956 1.1216 -1.0860 13 6 5.6504 -0.6965 -0.0225 14 1 4.8191 -1.0596 0.5636 15 6 6.9380 -1.0655 0.3048 16 7 7.1468 -2.1106 1.0752 17 14 8.3858 -0.0806 -0.3460 18 1 9.6525 -0.6781 0.1475 19 1 8.2832 1.3227 0.1285 20 1 8.3726 -0.1035 -1.8308 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8514 0.5681 0.8409 27 1 3.9785 2.1764 0.0889 28 1 2.6340 1.6717 -2.4324 29 1 4.2712 2.3594 -2.3057 30 1 3.5062 -0.1858 -3.8078 31 1 3.9198 1.3804 -4.5464 32 1 5.8758 0.4711 -5.7070 33 1 7.0063 -0.5608 -4.7985 34 1 5.3442 -1.1181 -5.1067 35 1 6.8683 -0.7354 -2.4615 36 1 5.2314 -1.4237 -2.5886 37 1 6.3955 -2.5772 1.4738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250379502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -50.719561 kcal Electronic energy + Delta-G solvation = -17133.152676 eV Core-core repulsion = 14523.958193 eV Total energy + Delta-G solvation = -2609.194483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.36500 -38.65450 -36.37830 -34.99373 -32.05154 -31.31110 -28.33013 -26.89348 -26.80237 -24.93449 -23.02109 -22.33624 -20.51315 -19.67716 -17.46104 -17.39379 -16.50261 -16.29827 -15.95153 -15.79557 -15.50259 -15.42399 -14.77175 -14.72844 -13.95081 -13.67264 -13.35710 -13.04879 -12.97586 -12.76889 -12.53709 -12.38011 -12.23887 -12.03198 -11.89060 -11.64461 -11.29128 -10.87176 -10.51036 -10.38267 -9.30549 -8.95309 -8.75390 -6.33693 1.44942 1.50416 1.71286 2.46006 2.96850 2.98196 3.14810 3.22415 4.07650 4.08356 4.25148 4.30748 4.34029 4.45980 4.48820 4.49729 4.55869 4.60553 4.66101 4.70419 4.75082 4.82451 4.85403 4.94521 4.97369 5.07280 5.17830 5.32743 5.74771 6.01276 6.10407 6.13358 6.31572 6.40399 6.65416 6.76230 7.43342 8.64316 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.011291 C = 0.008190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.811430 B = 2479.294542 C = 3417.953527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.075 3.925 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.052 3.948 7 C 0.063 3.937 8 N -0.560 5.560 9 C 0.026 3.974 10 C 0.067 3.933 11 C 0.204 3.796 12 H -0.008 1.008 13 C -0.586 4.586 14 H 0.025 0.975 15 C -0.017 4.017 16 N -0.935 5.935 17 Si 1.083 2.917 18 H -0.286 1.286 19 H -0.269 1.269 20 H -0.246 1.246 21 H 0.085 0.915 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.025 0.975 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.007 0.993 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 9.525 -9.151 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.002 4.002 4 C -0.067 4.067 5 N -0.263 5.263 6 C -0.076 4.076 7 C -0.065 4.065 8 N -0.285 5.285 9 C -0.122 4.122 10 C -0.061 4.061 11 C 0.095 3.905 12 H 0.009 0.991 13 C -0.625 4.625 14 H 0.043 0.957 15 C -0.216 4.216 16 N -0.570 5.570 17 Si 0.905 3.095 18 H -0.212 1.212 19 H -0.194 1.194 20 H -0.171 1.171 21 H 0.103 0.897 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.026 0.974 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.385 9.398 -9.203 15.085 hybrid contribution -1.905 -0.537 0.711 2.103 sum -9.290 8.861 -8.492 15.392 Atomic orbital electron populations 1.22877 0.80212 1.03160 1.00744 1.88056 1.20826 1.28713 1.95426 1.22610 0.92219 0.84536 1.00801 1.21993 0.94138 0.97139 0.93396 1.61975 1.18883 1.42712 1.02701 1.22293 1.00904 0.93980 0.90463 1.22164 0.87147 0.99161 0.98020 1.62294 1.18543 1.43908 1.03711 1.22404 1.00265 0.98197 0.91357 1.22501 0.99512 0.93526 0.90562 1.19337 0.85237 0.93240 0.92651 0.99068 1.22082 0.93615 1.32377 1.14427 0.95720 1.27067 1.03105 0.95301 0.96134 1.70974 1.34501 1.17013 1.34561 0.83573 0.72880 0.75190 0.77892 1.21239 1.19440 1.17135 0.89690 0.93074 0.92959 0.91632 0.91768 0.92578 0.93488 0.89007 0.94832 0.95665 0.87681 0.88961 0.91862 0.95961 0.91692 0.97419 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.91 10.65 -148.98 -1.59 -16.50 16 3 C 0.07 2.36 6.00 71.98 0.43 2.79 16 4 C 0.06 2.47 5.13 86.30 0.44 2.91 16 5 N -0.54 -23.38 4.47 -874.88 -3.91 -27.29 16 6 C 0.05 1.75 5.41 86.31 0.47 2.21 16 7 C 0.06 2.03 5.62 86.31 0.48 2.51 16 8 N -0.56 -20.67 4.97 -921.93 -4.58 -25.24 16 9 C 0.03 0.75 9.63 127.69 1.23 1.98 16 10 C 0.07 3.11 4.58 86.31 0.40 3.50 16 11 C 0.20 10.12 1.53 44.18 0.07 10.19 16 12 H -0.01 -0.41 6.79 -2.39 -0.02 -0.42 16 13 C -0.59 -34.49 7.91 25.60 0.20 -34.29 16 14 H 0.02 1.63 7.00 -2.91 -0.02 1.61 16 15 C -0.02 -1.03 5.33 84.66 0.45 -0.58 16 16 N -0.93 -59.76 13.69 21.45 0.29 -59.47 16 17 Si 1.08 51.60 26.40 68.60 1.81 53.41 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.25 -10.69 5.60 99.48 0.56 -10.13 16 21 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.71 6.28 -2.38 -0.01 1.69 16 26 H 0.06 2.73 6.10 -2.39 -0.01 2.71 16 27 H 0.05 1.74 8.12 -2.38 -0.02 1.72 16 28 H 0.09 2.61 6.25 -2.39 -0.01 2.59 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 3.09 4.81 -2.39 -0.01 3.08 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 Total: -1.00 -70.86 285.71 -1.71 -72.57 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.84 Total: 9.40 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.42 Total: -6.87 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -8.19 Total: -112.00 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -1.59 Total: -16.50 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 1.81 Total: 53.41 kcal Total: -70.86 -1.71 -72.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250379502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.847 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds