Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47437 * 2 1 4 4 F 1.39895 * 109.46997 * 239.99432 * 2 1 3 5 5 C 1.53002 * 109.46694 * 119.99699 * 2 1 3 6 6 H 1.09006 * 109.46768 * 174.36802 * 5 2 1 7 7 C 1.50702 * 109.47260 * 294.36598 * 5 2 1 8 8 H 1.08003 * 119.99794 * 114.97951 * 7 5 2 9 9 C 1.37872 * 119.99976 * 294.98180 * 7 5 2 10 10 N 1.31520 * 119.99980 * 359.39328 * 9 7 5 11 11 Si 1.86795 * 119.99888 * 179.39369 * 9 7 5 12 12 H 1.48506 * 109.47337 * 60.00279 * 11 9 7 13 13 H 1.48502 * 109.47085 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47344 * 299.99902 * 11 9 7 15 15 C 1.53002 * 109.47252 * 54.37023 * 5 2 1 16 16 C 1.50471 * 109.62901 * 67.02021 * 15 5 2 17 17 C 1.54268 * 112.38691 * 213.74498 * 16 15 5 18 18 C 1.54070 * 112.94392 * 318.57569 * 17 16 15 19 19 C 1.50468 * 112.50146 * 318.16954 * 18 17 16 20 20 C 1.54244 * 108.52061 * 94.15041 * 19 18 17 21 21 C 1.45539 * 112.40925 * 280.01577 * 20 19 18 22 22 H 1.08994 * 109.46788 * 292.78322 * 1 2 3 23 23 H 1.09003 * 109.46739 * 52.78243 * 1 2 3 24 24 H 1.09001 * 109.47287 * 172.77707 * 1 2 3 25 25 H 0.97001 * 119.99509 * 180.02562 * 10 9 7 26 26 H 1.08997 * 109.62391 * 306.63526 * 15 5 2 27 27 H 1.08995 * 108.87950 * 334.83381 * 16 15 5 28 28 H 1.09001 * 108.87486 * 93.28038 * 16 15 5 29 29 H 1.09000 * 108.83377 * 197.61736 * 17 16 15 30 30 H 1.08994 * 108.65910 * 79.41787 * 17 16 15 31 31 H 1.09005 * 108.87327 * 197.39365 * 18 17 16 32 32 H 1.08996 * 108.79823 * 78.89936 * 18 17 16 33 33 H 1.09005 * 109.62968 * 334.44347 * 19 18 17 34 34 H 1.08994 * 109.79009 * 213.95543 * 19 18 17 35 35 H 1.08999 * 108.89548 * 159.26317 * 20 19 18 36 36 H 1.09006 * 108.89433 * 40.76927 * 20 19 18 37 37 H 1.09002 * 108.89034 * 301.18523 * 21 20 19 38 38 H 1.08996 * 108.89740 * 182.69440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 1 3.1253 -0.8094 1.2003 7 6 1.6547 0.0652 2.4758 8 1 0.9638 -0.3550 3.1917 9 6 2.1842 1.3211 2.6839 10 7 3.0347 1.8279 1.8181 11 14 1.6936 2.3028 4.1954 12 1 2.0680 1.5485 5.4186 13 1 2.3972 3.6105 4.1862 14 1 0.2261 2.5297 4.1836 15 6 1.4176 -2.1171 1.3222 16 6 1.9368 -2.9616 0.1902 17 6 0.8816 -3.9592 -0.3305 18 6 0.0755 -4.6258 0.8008 19 6 0.9393 -5.0208 1.9678 20 6 0.9099 -3.8812 3.0069 21 6 1.8039 -2.7876 2.6564 22 1 -0.3633 0.3979 0.9474 23 1 -0.3633 0.6216 -0.8184 24 1 -0.3634 -1.0195 -0.1292 25 1 3.4075 2.7113 1.9648 26 1 0.3328 -2.0383 1.2525 27 1 2.2444 -2.3075 -0.6256 28 1 2.8052 -3.5215 0.5374 29 1 1.3851 -4.7348 -0.9075 30 1 0.1927 -3.4274 -0.9867 31 1 -0.4142 -5.5166 0.4072 32 1 -0.6873 -3.9283 1.1467 33 1 1.9628 -5.1804 1.6284 34 1 0.5558 -5.9364 2.4176 35 1 1.2045 -4.2807 3.9773 36 1 -0.1073 -3.4961 3.0797 37 1 2.8199 -3.1742 2.5760 38 1 1.7744 -2.0398 3.4489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257831976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = -85.867427 kcal Electronic energy + Delta-G solvation = -17485.254471 eV Core-core repulsion = 14854.615901 eV Total energy + Delta-G solvation = -2630.638570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.54028 -38.51017 -34.66087 -31.90003 -31.76712 -30.10406 -26.91924 -24.59098 -23.63039 -22.80732 -20.10727 -19.50966 -18.20634 -16.34155 -15.51985 -14.65604 -14.42821 -14.33030 -14.00279 -13.96196 -13.63019 -12.91665 -12.34752 -12.29602 -11.88113 -11.79051 -11.53258 -11.15909 -11.11481 -10.95636 -10.78504 -10.38497 -10.21975 -10.13757 -9.89881 -9.79648 -9.72612 -9.50043 -9.17685 -8.89101 -8.40998 -8.35171 -6.08686 -4.12201 3.27482 3.33387 3.35342 4.37639 5.13575 5.22306 5.27911 5.34642 5.77560 5.80339 5.86932 5.91909 6.01164 6.12879 6.13279 6.20525 6.22379 6.30897 6.38654 6.54734 6.61094 6.64587 6.71437 6.72820 6.89551 6.95446 7.00134 7.08293 7.17015 7.22270 7.31975 7.44263 7.61010 7.86882 7.95462 8.37942 8.91178 9.51671 10.99305 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.010343 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.773924 B = 2706.502711 C = 3342.612096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 H 0.100 0.900 4 F -0.237 7.237 5 C 0.035 3.965 6 H 0.037 0.963 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.069 4.069 16 C -0.149 4.149 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.110 4.110 21 C -0.116 4.116 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -8.179 -1.195 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.117 0.883 4 F -0.218 7.218 5 C 0.016 3.984 6 H 0.056 0.944 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.088 4.088 16 C -0.186 4.186 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.153 4.153 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.161 -8.025 -1.253 9.126 hybrid contribution -0.211 0.571 0.797 1.003 sum -4.372 -7.454 -0.456 8.653 Atomic orbital electron populations 1.22266 0.96894 1.00731 1.02051 1.22027 0.92921 0.98850 0.81650 0.88268 1.92420 1.90723 1.82985 1.55697 1.19196 0.96802 0.90071 0.92329 0.94438 1.21029 1.26780 1.00442 1.06039 0.91976 1.25025 0.94842 0.97849 0.96380 1.69884 1.29998 1.17455 1.35642 0.86697 0.78694 0.79352 0.83549 1.20233 1.21355 1.20235 1.20896 0.99723 0.95534 0.92617 1.22120 0.97192 0.97952 1.01365 1.21885 0.98086 0.97850 0.96967 1.21316 0.98553 0.99276 0.96147 1.21326 1.00374 0.97443 0.96163 1.20506 1.00612 0.96184 0.97460 1.20557 0.97866 0.97088 0.99808 0.90293 0.94590 0.93183 0.92722 0.92113 0.88407 0.93852 0.93621 0.93060 0.93597 0.92296 0.91965 0.93203 0.93601 0.92808 0.93769 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.82 37.16 0.33 -2.97 16 2 C 0.08 1.90 3.60 -26.73 -0.10 1.80 16 3 H 0.10 2.58 6.39 -51.93 -0.33 2.25 16 4 F -0.24 -5.40 13.87 2.25 0.03 -5.37 16 5 C 0.03 0.83 1.43 -91.77 -0.13 0.70 16 6 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.50 -12.78 6.26 -34.44 -0.22 -13.00 16 8 H 0.06 1.55 6.68 -52.48 -0.35 1.20 16 9 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 10 N -0.89 -24.57 11.71 55.43 0.65 -23.92 16 11 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.07 -1.39 1.11 -91.23 -0.10 -1.49 16 16 C -0.15 -2.78 4.75 -27.33 -0.13 -2.91 16 17 C -0.11 -1.75 5.85 -25.51 -0.15 -1.90 16 18 C -0.12 -1.67 5.32 -27.44 -0.15 -1.82 16 19 C -0.12 -1.66 5.61 -27.35 -0.15 -1.81 16 20 C -0.11 -1.75 5.26 -29.60 -0.16 -1.91 16 21 C -0.12 -2.19 4.55 -29.60 -0.13 -2.33 16 22 H 0.08 1.66 7.19 -51.93 -0.37 1.29 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.95 6.64 -51.93 -0.34 0.60 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.06 1.23 4.97 -51.93 -0.26 0.97 16 27 H 0.10 2.00 4.40 -51.93 -0.23 1.77 16 28 H 0.04 0.80 6.65 -51.93 -0.35 0.45 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 33 H 0.06 0.92 6.99 -51.93 -0.36 0.56 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.86 7.47 -51.93 -0.39 0.47 16 37 H 0.04 0.84 7.48 -51.93 -0.39 0.45 16 38 H 0.08 1.65 5.85 -51.93 -0.30 1.35 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -25.83 276.92 -7.46 -33.29 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.11 Total: 2.54 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -1.18 Total: -26.14 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.65 Total: -23.92 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.03 Total: -5.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -25.83 -7.46 -33.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.573 kcal (2) G-P(sol) polarization free energy of solvation -25.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds