Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47437 * 2 1 4 4 F 1.39895 * 109.46997 * 239.99432 * 2 1 3 5 5 C 1.53002 * 109.46694 * 119.99699 * 2 1 3 6 6 H 1.09006 * 109.46768 * 174.36802 * 5 2 1 7 7 C 1.50702 * 109.47260 * 294.36598 * 5 2 1 8 8 H 1.08003 * 119.99794 * 114.97951 * 7 5 2 9 9 C 1.37872 * 119.99976 * 294.98180 * 7 5 2 10 10 N 1.31520 * 119.99980 * 359.39328 * 9 7 5 11 11 Si 1.86795 * 119.99888 * 179.39369 * 9 7 5 12 12 H 1.48506 * 109.47337 * 60.00279 * 11 9 7 13 13 H 1.48502 * 109.47085 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47344 * 299.99902 * 11 9 7 15 15 C 1.53002 * 109.47252 * 54.37023 * 5 2 1 16 16 C 1.50471 * 109.62901 * 67.02021 * 15 5 2 17 17 C 1.54268 * 112.38691 * 213.74498 * 16 15 5 18 18 C 1.54070 * 112.94392 * 318.57569 * 17 16 15 19 19 C 1.50468 * 112.50146 * 318.16954 * 18 17 16 20 20 C 1.54244 * 108.52061 * 94.15041 * 19 18 17 21 21 C 1.45539 * 112.40925 * 280.01577 * 20 19 18 22 22 H 1.08994 * 109.46788 * 292.78322 * 1 2 3 23 23 H 1.09003 * 109.46739 * 52.78243 * 1 2 3 24 24 H 1.09001 * 109.47287 * 172.77707 * 1 2 3 25 25 H 0.97001 * 119.99509 * 180.02562 * 10 9 7 26 26 H 1.08997 * 109.62391 * 306.63526 * 15 5 2 27 27 H 1.08995 * 108.87950 * 334.83381 * 16 15 5 28 28 H 1.09001 * 108.87486 * 93.28038 * 16 15 5 29 29 H 1.09000 * 108.83377 * 197.61736 * 17 16 15 30 30 H 1.08994 * 108.65910 * 79.41787 * 17 16 15 31 31 H 1.09005 * 108.87327 * 197.39365 * 18 17 16 32 32 H 1.08996 * 108.79823 * 78.89936 * 18 17 16 33 33 H 1.09005 * 109.62968 * 334.44347 * 19 18 17 34 34 H 1.08994 * 109.79009 * 213.95543 * 19 18 17 35 35 H 1.08999 * 108.89548 * 159.26317 * 20 19 18 36 36 H 1.09006 * 108.89433 * 40.76927 * 20 19 18 37 37 H 1.09002 * 108.89034 * 301.18523 * 21 20 19 38 38 H 1.08996 * 108.89740 * 182.69440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2493 6 1 3.1253 -0.8094 1.2003 7 6 1.6547 0.0652 2.4758 8 1 0.9638 -0.3550 3.1917 9 6 2.1842 1.3211 2.6839 10 7 3.0347 1.8279 1.8181 11 14 1.6936 2.3028 4.1954 12 1 2.0680 1.5485 5.4186 13 1 2.3972 3.6105 4.1862 14 1 0.2261 2.5297 4.1836 15 6 1.4176 -2.1171 1.3222 16 6 1.9368 -2.9616 0.1902 17 6 0.8816 -3.9592 -0.3305 18 6 0.0755 -4.6258 0.8008 19 6 0.9393 -5.0208 1.9678 20 6 0.9099 -3.8812 3.0069 21 6 1.8039 -2.7876 2.6564 22 1 -0.3633 0.3979 0.9474 23 1 -0.3633 0.6216 -0.8184 24 1 -0.3634 -1.0195 -0.1292 25 1 3.4075 2.7113 1.9648 26 1 0.3328 -2.0383 1.2525 27 1 2.2444 -2.3075 -0.6256 28 1 2.8052 -3.5215 0.5374 29 1 1.3851 -4.7348 -0.9075 30 1 0.1927 -3.4274 -0.9867 31 1 -0.4142 -5.5166 0.4072 32 1 -0.6873 -3.9283 1.1467 33 1 1.9628 -5.1804 1.6284 34 1 0.5558 -5.9364 2.4176 35 1 1.2045 -4.2807 3.9773 36 1 -0.1073 -3.4961 3.0797 37 1 2.8199 -3.1742 2.5760 38 1 1.7744 -2.0398 3.4489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257831976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = -97.256004 kcal Electronic energy + Delta-G solvation = -17485.748317 eV Core-core repulsion = 14854.615901 eV Total energy + Delta-G solvation = -2631.132416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.41354 -39.97186 -36.37852 -33.68881 -33.16198 -31.72234 -28.71067 -26.23083 -25.08378 -24.45769 -21.71193 -20.99816 -19.72815 -18.28611 -17.30934 -16.38676 -16.21553 -15.88536 -15.56056 -15.39186 -15.16113 -14.47062 -14.00169 -13.92255 -13.57466 -13.29583 -12.88616 -12.84709 -12.74305 -12.72001 -12.44615 -12.08984 -11.83729 -11.63387 -11.52921 -11.27912 -11.16563 -11.01341 -10.83400 -10.64510 -10.35447 -10.12799 -8.11031 -6.20145 1.44174 1.44957 1.51884 2.44252 3.17991 3.86033 3.99612 4.12491 4.24684 4.34183 4.45033 4.49361 4.53692 4.56602 4.63415 4.67114 4.76133 4.91448 4.99668 5.07925 5.16302 5.25840 5.26906 5.40375 5.40698 5.45651 5.49838 5.55606 5.59229 5.63580 5.68316 5.75486 5.81683 5.98141 6.05473 6.39438 6.89796 7.46787 8.96498 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.010343 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.773924 B = 2706.502711 C = 3342.612096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.067 0.933 4 F -0.236 7.236 5 C 0.035 3.965 6 H -0.007 1.007 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.012 3.988 10 N -0.924 5.924 11 Si 0.948 3.052 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.267 1.267 15 C -0.061 4.061 16 C -0.146 4.146 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.109 4.109 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -9.755 -0.766 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.085 0.915 4 F -0.217 7.217 5 C 0.016 3.984 6 H 0.011 0.989 7 C -0.544 4.544 8 H 0.084 0.916 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.774 3.226 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.192 1.192 15 C -0.079 4.079 16 C -0.183 4.183 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.146 4.146 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.919 -9.613 -0.821 11.319 hybrid contribution 0.404 1.056 0.632 1.295 sum -5.515 -8.557 -0.188 10.182 Atomic orbital electron populations 1.22143 0.94191 1.02146 1.02366 1.21874 0.94965 0.96980 0.81518 0.91502 1.92433 1.90945 1.82847 1.55484 1.19135 0.94354 0.92541 0.92347 0.98881 1.21285 1.26231 1.00439 1.06402 0.91621 1.25745 0.94962 0.99003 0.98895 1.70029 1.31316 1.17661 1.37376 0.85754 0.78704 0.77731 0.80391 1.19846 1.21663 1.19188 1.20776 0.99438 0.93625 0.94072 1.22005 0.98268 0.98126 0.99948 1.21848 0.97404 0.97497 0.97694 1.21316 0.98166 1.00074 0.95602 1.21305 1.00260 0.97652 0.95676 1.20467 0.99737 0.95717 0.98814 1.20482 0.98407 0.97539 0.98219 0.91058 0.92800 0.91515 0.93022 0.91686 0.90502 0.94148 0.92092 0.93036 0.91053 0.92777 0.92570 0.90625 0.92230 0.92550 0.94577 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 8.82 71.98 0.64 -5.37 16 2 C 0.08 3.93 3.60 30.60 0.11 4.04 16 3 H 0.07 3.60 6.39 -2.39 -0.02 3.59 16 4 F -0.24 -10.90 13.87 44.97 0.62 -10.28 16 5 C 0.04 1.71 1.43 -11.54 -0.02 1.69 16 6 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 7 C -0.51 -25.96 6.26 25.60 0.16 -25.80 16 8 H 0.07 3.27 6.68 -2.91 -0.02 3.25 16 9 C 0.01 0.66 5.29 84.65 0.45 1.10 16 10 N -0.92 -52.53 11.71 21.45 0.25 -52.28 16 11 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 C -0.06 -2.42 1.11 -11.19 -0.01 -2.43 16 16 C -0.15 -5.35 4.75 30.21 0.14 -5.21 16 17 C -0.11 -3.11 5.85 31.39 0.18 -2.93 16 18 C -0.11 -2.89 5.32 30.14 0.16 -2.73 16 19 C -0.11 -2.83 5.61 30.20 0.17 -2.66 16 20 C -0.11 -3.24 5.26 28.74 0.15 -3.09 16 21 C -0.11 -4.07 4.55 28.74 0.13 -3.94 16 22 H 0.07 2.93 7.19 -2.39 -0.02 2.92 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 2.41 6.64 -2.39 -0.02 2.39 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.06 2.53 4.97 -2.39 -0.01 2.52 16 27 H 0.08 3.15 4.40 -2.39 -0.01 3.14 16 28 H 0.04 1.47 6.65 -2.39 -0.02 1.45 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.05 1.44 6.63 -2.39 -0.02 1.42 16 33 H 0.06 1.51 6.99 -2.38 -0.02 1.49 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.65 7.47 -2.38 -0.02 1.63 16 37 H 0.04 1.37 7.48 -2.39 -0.02 1.35 16 38 H 0.05 2.28 5.85 -2.39 -0.01 2.27 16 Total: -1.00 -55.99 276.92 6.19 -49.80 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.03 Total: 15.91 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 2.26 Total: -47.34 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.25 Total: -52.28 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 0.62 Total: -10.28 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -55.99 6.19 -49.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.457 kcal (2) G-P(sol) polarization free energy of solvation -55.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds