Wall clock time and date at job start Mon Mar 30 2020 03:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47796 * 2 1 4 4 F 1.39904 * 109.46756 * 239.99868 * 2 1 3 5 5 C 1.53005 * 109.47060 * 120.00162 * 2 1 3 6 6 H 1.09004 * 109.47056 * 173.65351 * 5 2 1 7 7 C 1.50703 * 109.46833 * 53.65492 * 5 2 1 8 8 H 1.07996 * 119.99802 * 239.99662 * 7 5 2 9 9 C 1.37880 * 119.99994 * 60.00601 * 7 5 2 10 10 N 1.31516 * 120.00076 * 359.97438 * 9 7 5 11 11 Si 1.86805 * 119.99745 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47072 * 59.99548 * 11 9 7 13 13 H 1.48495 * 109.46744 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47043 * 299.99487 * 11 9 7 15 15 C 1.52997 * 109.47004 * 293.65777 * 5 2 1 16 16 C 1.50477 * 108.87472 * 180.09437 * 15 5 2 17 17 C 1.54240 * 108.52427 * 214.92568 * 16 15 5 18 18 C 1.45549 * 112.40310 * 280.01835 * 17 16 15 19 19 C 1.54235 * 112.40647 * 61.93377 * 18 17 16 20 20 C 1.50474 * 108.52227 * 280.00786 * 19 18 17 21 21 C 1.54065 * 108.87426 * 303.07103 * 15 5 2 22 22 H 1.09005 * 109.46505 * 305.17614 * 1 2 3 23 23 H 1.08995 * 109.46851 * 65.16963 * 1 2 3 24 24 H 1.08993 * 109.46999 * 185.17412 * 1 2 3 25 25 H 0.96997 * 119.99509 * 180.02562 * 10 9 7 26 26 H 1.08997 * 108.77319 * 61.58143 * 15 5 2 27 27 H 1.09002 * 109.62642 * 95.22086 * 16 15 5 28 28 H 1.08997 * 109.62651 * 334.64048 * 16 15 5 29 29 H 1.08996 * 108.89727 * 159.26397 * 17 16 15 30 30 H 1.08999 * 108.89239 * 40.77097 * 17 16 15 31 31 H 1.08994 * 108.89142 * 182.69064 * 18 17 16 32 32 H 1.08999 * 108.89472 * 301.27991 * 18 17 16 33 33 H 1.09005 * 109.63277 * 39.72001 * 19 18 17 34 34 H 1.09003 * 109.62634 * 160.29286 * 19 18 17 35 35 H 1.09003 * 108.87743 * 214.93063 * 20 19 18 36 36 H 1.08994 * 108.87643 * 333.37595 * 20 19 18 37 37 H 1.08995 * 108.81451 * 76.64917 * 21 15 5 38 38 H 1.09004 * 108.73210 * 318.30402 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2493 6 1 3.1241 -0.8207 1.1943 7 6 1.4135 -2.0895 1.3302 8 1 0.8080 -2.3566 2.1837 9 6 1.6135 -3.0005 0.3147 10 7 2.3506 -2.6752 -0.7248 11 14 0.8375 -4.6967 0.4154 12 1 -0.6395 -4.5617 0.4907 13 1 1.2016 -5.4801 -0.7925 14 1 1.3330 -5.3966 1.6278 15 6 1.6643 0.0860 2.4934 16 6 2.1738 -0.6335 3.7128 17 6 1.1672 -0.4228 4.8624 18 6 1.3231 0.8734 5.5057 19 6 1.0681 2.0454 4.5360 20 6 2.3048 2.2562 3.7051 21 6 2.2465 1.5062 2.3606 22 1 -0.3632 0.5921 0.8401 23 1 -0.3633 0.4315 -0.9326 24 1 -0.3633 -1.0234 0.0927 25 1 2.4909 -3.3160 -1.4393 26 1 0.5780 0.1544 2.5524 27 1 3.1449 -0.2287 3.9978 28 1 2.2665 -1.6980 3.4977 29 1 1.3122 -1.2059 5.6065 30 1 0.1555 -0.4999 4.4641 31 1 0.6199 0.9424 6.3355 32 1 2.3378 0.9542 5.8956 33 1 0.2265 1.8063 3.8858 34 1 0.8500 2.9498 5.1041 35 1 2.4209 3.3222 3.5096 36 1 3.1709 1.9063 4.2669 37 1 1.6285 2.0760 1.6668 38 1 3.2555 1.4343 1.9543 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257831978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:17 Heat of formation + Delta-G solvation = -65.914624 kcal Electronic energy + Delta-G solvation = -17456.513173 eV Core-core repulsion = 14826.739821 eV Total energy + Delta-G solvation = -2629.773352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.41329 -38.69505 -34.71459 -32.07703 -31.58292 -29.93923 -26.69876 -24.64579 -23.94170 -22.36034 -20.14352 -19.83443 -17.93869 -16.01383 -15.52445 -14.63075 -14.49371 -14.07218 -13.88916 -13.62046 -13.16405 -13.01535 -12.50294 -12.06071 -11.89348 -11.56506 -11.30793 -11.20663 -11.04139 -10.76172 -10.64257 -10.36173 -10.21901 -10.06942 -10.03212 -9.87836 -9.68101 -9.42563 -9.08501 -8.80130 -8.34985 -8.14237 -5.70699 -3.84870 3.37753 3.43615 3.45047 4.53042 5.02108 5.15832 5.27201 5.45044 5.67428 5.72310 5.78973 5.84645 5.97804 6.04373 6.08539 6.18606 6.30941 6.37602 6.38367 6.42713 6.52117 6.56768 6.59254 6.62199 6.67478 6.84421 6.85499 7.01840 7.14434 7.26718 7.38289 7.42565 7.73680 7.97704 8.07050 8.49992 9.09497 9.73156 11.20831 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.009969 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.484681 B = 2807.973316 C = 3394.212254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 H 0.026 0.974 4 F -0.178 7.178 5 C 0.029 3.971 6 H 0.029 0.971 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.843 5.843 11 Si 0.879 3.121 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.279 1.279 15 C -0.072 4.072 16 C -0.105 4.105 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.116 4.116 22 H 0.047 0.953 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.253 0.747 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 7.547 7.741 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.044 0.956 4 F -0.158 7.158 5 C 0.011 3.989 6 H 0.047 0.953 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.478 5.478 11 Si 0.708 3.292 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.205 1.205 15 C -0.091 4.091 16 C -0.143 4.143 17 C -0.157 4.157 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.154 4.154 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.652 7.457 7.509 10.710 hybrid contribution -0.457 -0.944 -0.110 1.055 sum -2.109 6.513 7.399 10.080 Atomic orbital electron populations 1.22251 0.97338 1.03451 0.98832 1.21642 0.93099 0.92527 0.86433 0.95577 1.92966 1.89581 1.81937 1.51344 1.19398 0.97097 0.93918 0.88507 0.95263 1.20816 1.32596 0.97240 1.05688 0.92522 1.25053 0.95743 0.97830 0.95538 1.70520 1.36865 1.32653 1.07808 0.86883 0.79750 0.85429 0.77172 1.20544 1.21568 1.20479 1.20920 0.99365 0.92267 0.96534 1.21397 0.96715 1.02589 0.93578 1.20500 1.00588 0.96195 0.98420 1.20477 1.00883 0.95703 0.97806 1.21320 0.98875 0.97321 0.97802 1.21336 0.97929 0.98997 0.97058 1.22103 1.00923 0.96784 0.95559 0.93391 0.95082 0.90327 0.93660 0.92298 0.93478 0.89685 0.93346 0.92430 0.93436 0.92791 0.91546 0.92997 0.93433 0.92570 0.93021 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.07 37.16 0.34 -3.13 16 2 C 0.10 2.36 3.45 -26.73 -0.09 2.27 16 3 H 0.03 0.57 6.36 -51.93 -0.33 0.24 16 4 F -0.18 -4.92 13.02 2.25 0.03 -4.89 16 5 C 0.03 0.70 1.47 -91.77 -0.13 0.57 16 6 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.53 -13.75 5.71 -34.44 -0.20 -13.95 16 8 H 0.06 1.47 7.13 -52.49 -0.37 1.09 16 9 C 0.06 1.75 5.20 -17.82 -0.09 1.65 16 10 N -0.84 -24.49 9.60 55.43 0.53 -23.96 16 11 Si 0.88 21.36 29.54 -169.99 -5.02 16.33 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.07 -1.39 1.04 -91.33 -0.10 -1.49 16 16 C -0.11 -1.92 4.85 -27.34 -0.13 -2.05 16 17 C -0.12 -1.85 5.26 -29.60 -0.16 -2.01 16 18 C -0.11 -1.48 5.26 -29.60 -0.16 -1.64 16 19 C -0.12 -1.54 5.61 -27.35 -0.15 -1.69 16 20 C -0.12 -1.63 5.31 -27.43 -0.15 -1.77 16 21 C -0.12 -1.95 4.23 -25.62 -0.11 -2.06 16 22 H 0.05 0.91 6.88 -51.93 -0.36 0.55 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.87 6.78 -51.93 -0.35 1.52 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.16 5.25 -51.93 -0.27 0.88 16 27 H 0.05 0.82 6.98 -51.93 -0.36 0.46 16 28 H 0.08 1.77 6.23 -51.93 -0.32 1.45 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.93 7.47 -51.93 -0.39 0.54 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.70 7.46 -51.93 -0.39 0.31 16 33 H 0.07 0.94 6.98 -51.93 -0.36 0.58 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.78 6.63 -51.93 -0.34 0.44 16 37 H 0.05 0.85 7.17 -51.93 -0.37 0.48 16 38 H 0.05 0.96 7.98 -51.93 -0.41 0.55 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -27.99 276.41 -7.73 -35.72 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.31 Total: -2.07 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -1.13 Total: -25.30 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.53 Total: -23.96 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.03 Total: -4.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.99 -7.73 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.195 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds