Wall clock time and date at job start Mon Mar 30 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47796 * 2 1 4 4 F 1.39904 * 109.46756 * 239.99868 * 2 1 3 5 5 C 1.53005 * 109.47060 * 120.00162 * 2 1 3 6 6 H 1.09004 * 109.47056 * 173.65351 * 5 2 1 7 7 C 1.50703 * 109.46833 * 53.65492 * 5 2 1 8 8 H 1.07996 * 119.99802 * 239.99662 * 7 5 2 9 9 C 1.37880 * 119.99994 * 60.00601 * 7 5 2 10 10 N 1.31516 * 120.00076 * 359.97438 * 9 7 5 11 11 Si 1.86805 * 119.99745 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47072 * 59.99548 * 11 9 7 13 13 H 1.48495 * 109.46744 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47043 * 299.99487 * 11 9 7 15 15 C 1.52997 * 109.47004 * 293.65777 * 5 2 1 16 16 C 1.50477 * 108.87472 * 180.09437 * 15 5 2 17 17 C 1.54240 * 108.52427 * 214.92568 * 16 15 5 18 18 C 1.45549 * 112.40310 * 280.01835 * 17 16 15 19 19 C 1.54235 * 112.40647 * 61.93377 * 18 17 16 20 20 C 1.50474 * 108.52227 * 280.00786 * 19 18 17 21 21 C 1.54065 * 108.87426 * 303.07103 * 15 5 2 22 22 H 1.09005 * 109.46505 * 305.17614 * 1 2 3 23 23 H 1.08995 * 109.46851 * 65.16963 * 1 2 3 24 24 H 1.08993 * 109.46999 * 185.17412 * 1 2 3 25 25 H 0.96997 * 119.99509 * 180.02562 * 10 9 7 26 26 H 1.08997 * 108.77319 * 61.58143 * 15 5 2 27 27 H 1.09002 * 109.62642 * 95.22086 * 16 15 5 28 28 H 1.08997 * 109.62651 * 334.64048 * 16 15 5 29 29 H 1.08996 * 108.89727 * 159.26397 * 17 16 15 30 30 H 1.08999 * 108.89239 * 40.77097 * 17 16 15 31 31 H 1.08994 * 108.89142 * 182.69064 * 18 17 16 32 32 H 1.08999 * 108.89472 * 301.27991 * 18 17 16 33 33 H 1.09005 * 109.63277 * 39.72001 * 19 18 17 34 34 H 1.09003 * 109.62634 * 160.29286 * 19 18 17 35 35 H 1.09003 * 108.87743 * 214.93063 * 20 19 18 36 36 H 1.08994 * 108.87643 * 333.37595 * 20 19 18 37 37 H 1.08995 * 108.81451 * 76.64917 * 21 15 5 38 38 H 1.09004 * 108.73210 * 318.30402 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2493 6 1 3.1241 -0.8207 1.1943 7 6 1.4135 -2.0895 1.3302 8 1 0.8080 -2.3566 2.1837 9 6 1.6135 -3.0005 0.3147 10 7 2.3506 -2.6752 -0.7248 11 14 0.8375 -4.6967 0.4154 12 1 -0.6395 -4.5617 0.4907 13 1 1.2016 -5.4801 -0.7925 14 1 1.3330 -5.3966 1.6278 15 6 1.6643 0.0860 2.4934 16 6 2.1738 -0.6335 3.7128 17 6 1.1672 -0.4228 4.8624 18 6 1.3231 0.8734 5.5057 19 6 1.0681 2.0454 4.5360 20 6 2.3048 2.2562 3.7051 21 6 2.2465 1.5062 2.3606 22 1 -0.3632 0.5921 0.8401 23 1 -0.3633 0.4315 -0.9326 24 1 -0.3633 -1.0234 0.0927 25 1 2.4909 -3.3160 -1.4393 26 1 0.5780 0.1544 2.5524 27 1 3.1449 -0.2287 3.9978 28 1 2.2665 -1.6980 3.4977 29 1 1.3122 -1.2059 5.6065 30 1 0.1555 -0.4999 4.4641 31 1 0.6199 0.9424 6.3355 32 1 2.3378 0.9542 5.8956 33 1 0.2265 1.8063 3.8858 34 1 0.8500 2.9498 5.1041 35 1 2.4209 3.3222 3.5096 36 1 3.1709 1.9063 4.2669 37 1 1.6285 2.0760 1.6668 38 1 3.2555 1.4343 1.9543 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257831978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:16 Heat of formation + Delta-G solvation = -79.374526 kcal Electronic energy + Delta-G solvation = -17457.096838 eV Core-core repulsion = 14826.739821 eV Total energy + Delta-G solvation = -2630.357017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.45859 -40.07028 -36.36299 -33.85127 -32.98850 -31.56335 -28.50634 -26.23909 -25.42407 -23.96027 -21.63417 -21.26185 -19.45818 -18.03934 -17.19163 -16.15591 -16.11989 -15.96194 -15.28278 -15.06906 -14.91452 -14.51000 -13.94266 -13.74836 -13.54486 -13.06889 -12.93371 -12.84217 -12.69409 -12.59056 -12.52003 -12.03847 -11.75178 -11.48836 -11.42557 -11.21978 -11.16823 -11.01483 -10.79682 -10.50770 -10.30536 -10.16614 -7.82200 -5.99787 1.42741 1.43196 1.49830 2.49443 3.32722 3.86078 3.97504 4.13077 4.33391 4.38856 4.41619 4.47369 4.49419 4.58745 4.64039 4.70593 4.78744 4.82597 5.03334 5.07708 5.20532 5.26068 5.31675 5.36592 5.42133 5.46896 5.52003 5.53679 5.59741 5.63589 5.68755 5.75101 5.94251 5.99343 6.08230 6.45803 7.01688 7.60215 9.08446 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.009969 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.484681 B = 2807.973316 C = 3394.212254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.088 3.912 3 H 0.049 0.951 4 F -0.204 7.204 5 C 0.029 3.971 6 H -0.011 1.011 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.876 5.876 11 Si 0.935 3.065 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.274 1.274 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.114 4.114 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.247 0.753 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 8.925 9.522 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 H 0.066 0.934 4 F -0.185 7.185 5 C 0.010 3.990 6 H 0.007 0.993 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.513 5.513 11 Si 0.762 3.238 12 H -0.198 1.198 13 H -0.220 1.220 14 H -0.199 1.199 15 C -0.080 4.080 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.151 4.151 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.766 8.836 9.309 13.129 hybrid contribution -0.080 -1.358 -0.645 1.506 sum -2.846 7.478 8.663 11.793 Atomic orbital electron populations 1.22123 0.95463 1.02372 1.00837 1.21890 0.94679 0.93214 0.85120 0.93353 1.92911 1.90081 1.82692 1.52791 1.19372 0.94349 0.94115 0.91161 0.99327 1.21112 1.31586 0.98365 1.04972 0.92606 1.25732 0.96494 1.01108 0.95535 1.70699 1.38639 1.33450 1.08493 0.85989 0.79205 0.81686 0.76953 1.19819 1.21962 1.19903 1.20791 0.99372 0.93276 0.94517 1.21314 0.98104 1.00224 0.94568 1.20430 0.98951 0.98124 0.97411 1.20462 1.01935 0.94247 0.98218 1.21334 0.97864 0.98326 0.97707 1.21302 0.98605 0.99630 0.95276 1.22049 0.99886 0.95407 0.97787 0.90683 0.93593 0.93013 0.94366 0.92302 0.92924 0.93096 0.92610 0.93144 0.91387 0.92135 0.92445 0.90504 0.91449 0.92445 0.92522 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 9.07 71.98 0.65 -5.66 16 2 C 0.09 4.15 3.45 30.60 0.11 4.25 16 3 H 0.05 2.06 6.36 -2.39 -0.02 2.05 16 4 F -0.20 -11.55 13.02 44.97 0.59 -10.97 16 5 C 0.03 1.40 1.47 -11.54 -0.02 1.38 16 6 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 7 C -0.52 -27.82 5.71 25.60 0.15 -27.67 16 8 H 0.06 2.92 7.13 -2.91 -0.02 2.90 16 9 C 0.01 0.72 5.20 84.66 0.44 1.16 16 10 N -0.88 -52.43 9.60 21.45 0.21 -52.22 16 11 Si 0.93 44.51 29.54 68.60 2.03 46.54 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 15 C -0.06 -2.31 1.04 -11.25 -0.01 -2.32 16 16 C -0.10 -3.76 4.85 30.20 0.15 -3.61 16 17 C -0.11 -3.22 5.26 28.74 0.15 -3.07 16 18 C -0.11 -2.58 5.26 28.74 0.15 -2.43 16 19 C -0.11 -2.61 5.61 30.20 0.17 -2.44 16 20 C -0.11 -2.76 5.31 30.14 0.16 -2.60 16 21 C -0.11 -3.64 4.23 31.32 0.13 -3.50 16 22 H 0.07 2.69 6.88 -2.38 -0.02 2.67 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 2.44 6.78 -2.39 -0.02 2.42 16 25 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.06 2.22 5.25 -2.39 -0.01 2.21 16 27 H 0.05 1.80 6.98 -2.39 -0.02 1.78 16 28 H 0.05 2.16 6.23 -2.39 -0.01 2.14 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.52 7.47 -2.39 -0.02 1.50 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.35 7.46 -2.39 -0.02 1.33 16 33 H 0.06 1.43 6.98 -2.38 -0.02 1.41 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.43 6.63 -2.39 -0.02 1.41 16 37 H 0.06 1.74 7.17 -2.39 -0.02 1.72 16 38 H 0.04 1.41 7.98 -2.38 -0.02 1.39 16 Total: -1.00 -61.12 276.41 6.06 -55.06 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.02 Total: 8.10 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 2.23 Total: -46.51 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.21 Total: -52.22 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 0.59 Total: -10.97 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.12 6.06 -55.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.314 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds