Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46653 * 2 1 4 4 F 1.39897 * 109.47333 * 120.00233 * 2 1 3 5 5 C 1.53002 * 109.46724 * 240.00828 * 2 1 3 6 6 H 1.08993 * 109.47446 * 56.39685 * 5 2 1 7 7 C 1.50699 * 109.46800 * 296.39275 * 5 2 1 8 8 H 1.08000 * 120.00698 * 299.09775 * 7 5 2 9 9 C 1.37886 * 119.99904 * 119.09910 * 7 5 2 10 10 N 1.31508 * 120.00074 * 174.16050 * 9 7 5 11 11 Si 1.86803 * 119.99751 * 354.16037 * 9 7 5 12 12 H 1.48502 * 109.46814 * 85.17033 * 11 9 7 13 13 H 1.48495 * 109.47026 * 205.17144 * 11 9 7 14 14 H 1.48498 * 109.46946 * 325.17036 * 11 9 7 15 15 C 1.53000 * 109.47078 * 176.39883 * 5 2 1 16 16 C 1.50467 * 108.88100 * 179.97438 * 15 5 2 17 17 C 1.54232 * 108.52769 * 214.93031 * 16 15 5 18 18 C 1.45544 * 112.40952 * 280.00939 * 17 16 15 19 19 C 1.54247 * 112.32562 * 61.97820 * 18 17 16 20 20 C 1.50553 * 108.48442 * 279.88418 * 19 18 17 21 21 C 1.54068 * 112.41586 * 94.26776 * 20 19 18 22 22 H 1.09003 * 109.47289 * 184.81819 * 1 2 3 23 23 H 1.09005 * 109.47344 * 304.81471 * 1 2 3 24 24 H 1.09003 * 109.47557 * 64.81477 * 1 2 3 25 25 H 0.96999 * 120.00011 * 180.02562 * 10 9 7 26 26 H 1.09005 * 108.76899 * 61.48198 * 15 5 2 27 27 H 1.09003 * 109.62408 * 95.21860 * 16 15 5 28 28 H 1.08996 * 109.62997 * 334.64324 * 16 15 5 29 29 H 1.08994 * 108.89944 * 159.25047 * 17 16 15 30 30 H 1.09009 * 108.89266 * 40.75854 * 17 16 15 31 31 H 1.08995 * 108.89749 * 182.67897 * 18 17 16 32 32 H 1.08996 * 108.89408 * 301.27665 * 18 17 16 33 33 H 1.09005 * 109.63033 * 39.68470 * 19 18 17 34 34 H 1.09006 * 109.62680 * 160.26186 * 19 18 17 35 35 H 1.08997 * 108.92263 * 333.51498 * 20 19 18 36 36 H 1.09003 * 108.91367 * 215.01698 * 20 19 18 37 37 H 1.08990 * 108.81679 * 197.42088 * 21 20 19 38 38 H 1.08996 * 108.81103 * 79.13540 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0399 -0.7211 -1.2494 6 1 1.6248 -0.2458 -2.1381 7 6 1.6118 -2.1653 -1.2056 8 1 1.9421 -2.8024 -0.3985 9 6 0.7983 -2.6736 -2.1962 10 7 0.5182 -3.9582 -2.2223 11 14 0.0942 -1.5373 -3.5010 12 1 1.0810 -1.3723 -4.5984 13 1 -1.1573 -2.1233 -4.0446 14 1 -0.2008 -0.2131 -2.8972 15 6 3.5672 -0.6431 -1.2956 16 6 4.0541 -1.3562 -2.5279 17 6 5.3945 -2.0444 -2.1984 18 6 6.5171 -1.1189 -2.2350 19 6 6.3823 0.0073 -1.1896 20 6 5.4442 1.0524 -1.7320 21 6 3.9919 0.8376 -1.2647 22 1 -0.3634 -1.0240 0.0863 23 1 -0.3634 0.5867 0.8437 24 1 -0.3634 0.4373 -0.9300 25 1 -0.0538 -4.3158 -2.9193 26 1 3.9708 -1.1445 -0.4158 27 1 4.2002 -0.6367 -3.3335 28 1 3.3226 -2.1054 -2.8305 29 1 5.5697 -2.8406 -2.9219 30 1 5.3308 -2.4828 -1.2024 31 1 7.4366 -1.6714 -2.0419 32 1 6.5752 -0.6735 -3.2281 33 1 5.9816 -0.4006 -0.2615 34 1 7.3593 0.4541 -1.0047 35 1 5.4724 1.0215 -2.8212 36 1 5.7798 2.0349 -1.4001 37 1 3.3262 1.4077 -1.9126 38 1 3.8918 1.2108 -0.2456 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257831980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = -89.405885 kcal Electronic energy + Delta-G solvation = -17430.001437 eV Core-core repulsion = 14799.209428 eV Total energy + Delta-G solvation = -2630.792009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.47491 -38.60846 -34.77160 -32.14288 -31.55263 -30.71214 -27.18544 -24.79033 -23.89295 -22.22175 -20.12500 -19.73340 -18.22870 -17.00009 -15.40536 -14.93949 -14.68304 -14.28961 -14.05787 -13.77188 -13.55867 -13.07433 -12.62765 -12.46156 -12.15810 -11.75778 -11.66891 -11.41239 -11.34210 -11.10319 -10.83798 -10.37220 -10.22577 -10.07624 -10.03893 -9.88500 -9.75267 -9.53871 -9.15746 -9.07659 -8.89443 -8.47618 -6.07588 -4.03969 3.24655 3.31912 3.34734 4.38815 5.05758 5.12630 5.24682 5.29893 5.58562 5.70164 5.72276 5.78726 5.85711 5.90517 5.96916 6.01532 6.09291 6.12374 6.18793 6.36813 6.48072 6.51193 6.57895 6.60187 6.64486 6.68887 6.70427 6.92565 7.00245 7.05731 7.13425 7.16456 7.45018 7.51018 7.76791 8.54764 9.03378 9.54678 11.05713 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.011664 C = 0.009621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.508495 B = 2399.977752 C = 2909.509362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 H 0.051 0.949 4 F -0.219 7.219 5 C -0.011 4.011 6 H 0.045 0.955 7 C -0.492 4.492 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.864 3.136 12 H -0.275 1.275 13 H -0.291 1.291 14 H -0.263 1.263 15 C -0.073 4.073 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.118 4.118 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.263 0.737 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 8.934 -0.171 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.059 3.941 3 H 0.068 0.932 4 F -0.201 7.201 5 C -0.030 4.030 6 H 0.063 0.937 7 C -0.530 4.530 8 H 0.095 0.905 9 C -0.127 4.127 10 N -0.536 5.536 11 Si 0.692 3.308 12 H -0.201 1.201 13 H -0.218 1.218 14 H -0.188 1.188 15 C -0.092 4.092 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.156 4.156 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.903 8.759 -0.248 11.156 hybrid contribution -0.491 0.521 -0.740 1.030 sum 6.412 9.280 -0.989 11.323 Atomic orbital electron populations 1.22320 0.96022 1.03880 1.00663 1.21762 0.93962 0.93757 0.84660 0.93154 1.92702 1.90278 1.83826 1.53251 1.19984 0.92490 0.97683 0.92859 0.93650 1.20790 1.29222 0.92802 1.10149 0.90459 1.25058 0.95985 0.94591 0.97070 1.69895 1.37574 1.11878 1.34211 0.87117 0.79149 0.81835 0.82715 1.20097 1.21758 1.18833 1.20985 0.97279 0.92469 0.98458 1.21368 0.96355 0.99700 0.96900 1.20433 0.95339 0.97888 1.01772 1.20496 0.98395 0.97249 0.98713 1.21341 0.98277 0.96368 0.99388 1.21329 0.95540 0.97752 1.00556 1.22141 0.94912 0.98407 1.00128 0.90116 0.93959 0.92113 0.92719 0.91728 0.93948 0.89222 0.93242 0.92179 0.93367 0.92908 0.91384 0.93001 0.92546 0.93429 0.93080 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.36 37.16 0.35 -3.05 16 2 C 0.10 1.97 3.33 -26.73 -0.09 1.88 16 3 H 0.05 0.92 6.51 -51.93 -0.34 0.58 16 4 F -0.22 -4.97 16.32 2.25 0.04 -4.93 16 5 C -0.01 -0.24 1.08 -91.77 -0.10 -0.34 16 6 H 0.05 1.02 4.73 -51.93 -0.25 0.77 16 7 C -0.49 -13.02 6.11 -34.44 -0.21 -13.23 16 8 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16 9 C 0.07 2.04 5.07 -17.82 -0.09 1.94 16 10 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 11 Si 0.86 20.59 26.99 -169.99 -4.59 16.00 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.26 -5.88 5.52 56.52 0.31 -5.57 16 15 C -0.07 -1.44 1.21 -91.33 -0.11 -1.55 16 16 C -0.11 -2.08 4.97 -27.35 -0.14 -2.21 16 17 C -0.12 -2.00 5.26 -29.60 -0.16 -2.16 16 18 C -0.11 -1.60 5.27 -29.59 -0.16 -1.75 16 19 C -0.12 -1.62 5.61 -27.30 -0.15 -1.78 16 20 C -0.11 -1.63 5.32 -27.40 -0.15 -1.77 16 21 C -0.12 -1.95 4.23 -25.61 -0.11 -2.06 16 22 H 0.08 1.79 7.50 -51.93 -0.39 1.40 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.16 6.93 -51.93 -0.36 0.80 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.06 1.37 6.39 -51.93 -0.33 1.04 16 27 H 0.04 0.77 6.98 -51.93 -0.36 0.41 16 28 H 0.09 2.07 6.17 -51.93 -0.32 1.75 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.09 7.47 -51.92 -0.39 0.70 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 7.46 -51.93 -0.39 0.34 16 33 H 0.07 1.03 6.97 -51.93 -0.36 0.67 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.83 7.98 -51.93 -0.41 0.41 16 38 H 0.05 0.83 7.24 -51.93 -0.38 0.46 16 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -27.79 279.82 -7.05 -34.84 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.38 Total: 1.72 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.11 Total: -26.09 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.04 Total: -4.93 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.59 Total: 16.00 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.79 -7.05 -34.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.568 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds