Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 F 1.39899 * 109.47215 * 239.99379 * 2 1 3 5 5 C 1.52999 * 109.46781 * 119.99944 * 2 1 3 6 6 H 1.09005 * 109.47531 * 66.50191 * 5 2 1 7 7 C 1.50700 * 109.47273 * 306.50194 * 5 2 1 8 8 H 1.08001 * 119.99958 * 272.02898 * 7 5 2 9 9 C 1.37880 * 120.00313 * 92.02902 * 7 5 2 10 10 N 1.31512 * 119.99681 * 9.71759 * 9 7 5 11 11 Si 1.86801 * 120.00079 * 189.71341 * 9 7 5 12 12 H 1.48506 * 109.46909 * 59.99846 * 11 9 7 13 13 H 1.48492 * 109.47080 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47127 * 300.00379 * 11 9 7 15 15 C 1.53004 * 109.47191 * 186.50221 * 5 2 1 16 16 C 1.53006 * 109.46884 * 294.58601 * 15 5 2 17 17 C 1.52995 * 109.46931 * 179.97438 * 16 15 5 18 18 C 1.53006 * 109.47214 * 60.00065 * 17 16 15 19 19 C 1.52994 * 109.47192 * 300.00103 * 18 17 16 20 20 C 1.52999 * 109.47131 * 174.58542 * 15 5 2 21 21 H 1.09000 * 109.47576 * 295.95892 * 1 2 3 22 22 H 1.09001 * 109.47053 * 55.95187 * 1 2 3 23 23 H 1.09001 * 109.47402 * 175.95427 * 1 2 3 24 24 H 1.09003 * 109.47072 * 185.74302 * 3 2 1 25 25 H 1.08996 * 109.47061 * 305.73990 * 3 2 1 26 26 H 1.09002 * 109.46905 * 65.74191 * 3 2 1 27 27 H 0.97003 * 120.00190 * 359.97438 * 10 9 7 28 28 H 1.08994 * 109.46882 * 54.58396 * 15 5 2 29 29 H 1.09003 * 109.47056 * 300.00156 * 16 15 5 30 30 H 1.08996 * 109.46753 * 59.99686 * 16 15 5 31 31 H 1.08993 * 109.47502 * 300.00088 * 17 16 15 32 32 H 1.09000 * 109.47215 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.46832 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46887 * 59.99593 * 18 17 16 35 35 H 1.09003 * 109.46882 * 300.00099 * 19 18 17 36 36 H 1.08995 * 109.47481 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47478 * 300.00033 * 20 15 5 38 38 H 1.09004 * 109.47036 * 60.00526 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0399 -0.7212 1.2493 6 1 1.7747 -1.7770 1.1930 7 6 1.4105 -0.1098 2.4744 8 1 1.8768 0.7373 2.9554 9 6 0.2393 -0.6319 2.9814 10 7 -0.2269 -1.7714 2.5191 11 14 -0.6850 0.2794 4.3247 12 1 -1.0757 1.6247 3.8317 13 1 -1.9034 -0.4852 4.6933 14 1 0.1890 0.4237 5.5166 15 6 3.5612 -0.5814 1.3337 16 6 4.2071 -1.3192 0.1592 17 6 5.7283 -1.1789 0.2433 18 6 6.2242 -1.7818 1.5592 19 6 5.5782 -1.0440 2.7336 20 6 4.0565 -1.1846 2.6496 21 1 -0.3634 0.4498 0.9240 22 1 -0.3633 0.5754 -0.8515 23 1 -0.3634 -1.0251 -0.0725 24 1 3.1252 1.4442 -0.1028 25 1 1.5952 1.9851 -0.8341 26 1 1.7630 1.9257 0.9369 27 1 0.2530 -2.2444 1.8213 28 1 3.8318 0.4736 1.2930 29 1 3.9364 -2.3743 0.1999 30 1 3.8541 -0.8895 -0.7782 31 1 5.9986 -0.1238 0.2024 32 1 6.1885 -1.7049 -0.5931 33 1 7.3079 -1.6821 1.6189 34 1 5.9538 -2.8369 1.6001 35 1 5.8485 0.0112 2.6927 36 1 5.9311 -1.4738 3.6711 37 1 3.5964 -0.6591 3.4863 38 1 3.7859 -2.2398 2.6902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257833817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -93.166225 kcal Electronic energy + Delta-G solvation = -17600.383369 eV Core-core repulsion = 14969.428299 eV Total energy + Delta-G solvation = -2630.955070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.69248 -38.19984 -35.20250 -31.76712 -30.51976 -30.07126 -26.44751 -25.97062 -23.54451 -21.82611 -20.93391 -19.20935 -18.86885 -16.42205 -15.27633 -14.88372 -14.41986 -13.95432 -13.78149 -13.74659 -13.42794 -12.81283 -12.70654 -12.12826 -11.78733 -11.49714 -11.29174 -11.21313 -11.16747 -11.00818 -10.61574 -10.59072 -10.47187 -10.37921 -10.20203 -10.08034 -9.74327 -9.45245 -9.09624 -8.80921 -8.49537 -8.22019 -6.38972 -4.07146 3.39502 3.40830 3.59229 4.47219 5.22700 5.25709 5.35671 5.37509 5.67821 5.77808 5.86324 5.91184 5.94588 6.09476 6.12284 6.12945 6.15763 6.26693 6.35975 6.42531 6.53389 6.59179 6.65436 6.72990 6.75223 6.83332 6.89426 7.04119 7.09673 7.18997 7.22211 7.33524 7.46478 7.63172 8.22039 8.40646 8.84772 9.61599 10.98175 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.011440 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.588888 B = 2447.029392 C = 3133.642507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 C -0.156 4.156 4 F -0.234 7.234 5 C 0.022 3.978 6 H 0.043 0.957 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.028 3.972 10 N -0.903 5.903 11 Si 1.056 2.944 12 H -0.287 1.287 13 H -0.283 1.283 14 H -0.288 1.288 15 C -0.070 4.070 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.097 4.097 21 H 0.089 0.911 22 H 0.031 0.969 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.272 0.728 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 2.877 -2.332 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 C -0.214 4.214 4 F -0.214 7.214 5 C 0.002 3.998 6 H 0.061 0.939 7 C -0.623 4.623 8 H 0.070 0.930 9 C -0.178 4.178 10 N -0.539 5.539 11 Si 0.884 3.116 12 H -0.214 1.214 13 H -0.209 1.209 14 H -0.215 1.215 15 C -0.089 4.089 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.135 4.135 21 H 0.108 0.892 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.844 2.776 -1.393 6.618 hybrid contribution 1.392 0.033 -1.050 1.744 sum 7.236 2.809 -2.443 8.137 Atomic orbital electron populations 1.22201 0.94469 1.02083 1.02044 1.21525 0.94396 0.91933 0.83015 1.22247 1.00543 0.96315 1.02259 1.92627 1.90001 1.83552 1.55265 1.19424 0.91079 0.97004 0.92251 0.93908 1.21643 1.10508 1.17966 1.12190 0.93028 1.25685 0.95764 0.95935 1.00401 1.70822 1.41965 1.13138 1.27946 0.83731 0.76533 0.75510 0.75791 1.21365 1.20869 1.21457 1.21136 0.96607 0.98119 0.93027 1.22001 0.93482 1.00716 1.00683 1.21539 0.97382 1.00033 0.96451 1.21523 0.98495 0.99779 0.95623 1.21609 0.97574 0.99626 0.96957 1.21426 0.92344 1.00720 0.99004 0.89207 0.95041 0.92614 0.92790 0.94144 0.90181 0.91559 0.92572 0.93101 0.90471 0.92818 0.93258 0.93337 0.92543 0.92825 0.93157 0.90864 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 7.92 37.16 0.29 -3.07 16 2 C 0.11 2.40 1.10 -90.62 -0.10 2.30 16 3 C -0.16 -3.03 8.11 37.16 0.30 -2.73 16 4 F -0.23 -5.16 13.75 2.25 0.03 -5.13 16 5 C 0.02 0.50 1.25 -91.77 -0.11 0.39 16 6 H 0.04 1.13 6.11 -51.93 -0.32 0.81 16 7 C -0.59 -14.60 4.96 -34.44 -0.17 -14.77 16 8 H 0.05 1.30 7.71 -52.49 -0.40 0.90 16 9 C 0.03 0.73 3.80 -17.82 -0.07 0.66 16 10 N -0.90 -25.25 12.99 55.43 0.72 -24.53 16 11 Si 1.06 23.66 29.91 -169.99 -5.09 18.57 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 15 C -0.07 -1.43 1.42 -90.62 -0.13 -1.56 16 16 C -0.13 -2.46 4.67 -26.73 -0.12 -2.58 16 17 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 18 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 19 C -0.12 -1.95 5.92 -26.71 -0.16 -2.10 16 20 C -0.10 -1.92 4.88 -26.70 -0.13 -2.05 16 21 H 0.09 2.13 5.93 -51.93 -0.31 1.83 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 1.32 7.77 -51.93 -0.40 0.91 16 24 H 0.05 0.99 6.57 -51.93 -0.34 0.65 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.59 7.24 -51.93 -0.38 1.22 16 27 H 0.27 7.71 6.22 -40.82 -0.25 7.46 16 28 H 0.06 1.14 6.14 -51.93 -0.32 0.82 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.50 5.51 -51.93 -0.29 1.22 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.56 7.00 -51.93 -0.36 1.20 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -26.04 281.47 -7.20 -33.25 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.40 Total: 3.03 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -0.72 Total: -29.42 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.72 Total: -24.53 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.03 Total: -5.13 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.09 Total: 18.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.04 -7.20 -33.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257833817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.917 kcal (2) G-P(sol) polarization free energy of solvation -26.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds