Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 F 1.39899 * 109.47215 * 239.99379 * 2 1 3 5 5 C 1.52999 * 109.46781 * 119.99944 * 2 1 3 6 6 H 1.09005 * 109.47531 * 66.50191 * 5 2 1 7 7 C 1.50700 * 109.47273 * 306.50194 * 5 2 1 8 8 H 1.08001 * 119.99958 * 272.02898 * 7 5 2 9 9 C 1.37880 * 120.00313 * 92.02902 * 7 5 2 10 10 N 1.31512 * 119.99681 * 9.71759 * 9 7 5 11 11 Si 1.86801 * 120.00079 * 189.71341 * 9 7 5 12 12 H 1.48506 * 109.46909 * 59.99846 * 11 9 7 13 13 H 1.48492 * 109.47080 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47127 * 300.00379 * 11 9 7 15 15 C 1.53004 * 109.47191 * 186.50221 * 5 2 1 16 16 C 1.53006 * 109.46884 * 294.58601 * 15 5 2 17 17 C 1.52995 * 109.46931 * 179.97438 * 16 15 5 18 18 C 1.53006 * 109.47214 * 60.00065 * 17 16 15 19 19 C 1.52994 * 109.47192 * 300.00103 * 18 17 16 20 20 C 1.52999 * 109.47131 * 174.58542 * 15 5 2 21 21 H 1.09000 * 109.47576 * 295.95892 * 1 2 3 22 22 H 1.09001 * 109.47053 * 55.95187 * 1 2 3 23 23 H 1.09001 * 109.47402 * 175.95427 * 1 2 3 24 24 H 1.09003 * 109.47072 * 185.74302 * 3 2 1 25 25 H 1.08996 * 109.47061 * 305.73990 * 3 2 1 26 26 H 1.09002 * 109.46905 * 65.74191 * 3 2 1 27 27 H 0.97003 * 120.00190 * 359.97438 * 10 9 7 28 28 H 1.08994 * 109.46882 * 54.58396 * 15 5 2 29 29 H 1.09003 * 109.47056 * 300.00156 * 16 15 5 30 30 H 1.08996 * 109.46753 * 59.99686 * 16 15 5 31 31 H 1.08993 * 109.47502 * 300.00088 * 17 16 15 32 32 H 1.09000 * 109.47215 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.46832 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46887 * 59.99593 * 18 17 16 35 35 H 1.09003 * 109.46882 * 300.00099 * 19 18 17 36 36 H 1.08995 * 109.47481 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47478 * 300.00033 * 20 15 5 38 38 H 1.09004 * 109.47036 * 60.00526 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0399 -0.7212 1.2493 6 1 1.7747 -1.7770 1.1930 7 6 1.4105 -0.1098 2.4744 8 1 1.8768 0.7373 2.9554 9 6 0.2393 -0.6319 2.9814 10 7 -0.2269 -1.7714 2.5191 11 14 -0.6850 0.2794 4.3247 12 1 -1.0757 1.6247 3.8317 13 1 -1.9034 -0.4852 4.6933 14 1 0.1890 0.4237 5.5166 15 6 3.5612 -0.5814 1.3337 16 6 4.2071 -1.3192 0.1592 17 6 5.7283 -1.1789 0.2433 18 6 6.2242 -1.7818 1.5592 19 6 5.5782 -1.0440 2.7336 20 6 4.0565 -1.1846 2.6496 21 1 -0.3634 0.4498 0.9240 22 1 -0.3633 0.5754 -0.8515 23 1 -0.3634 -1.0251 -0.0725 24 1 3.1252 1.4442 -0.1028 25 1 1.5952 1.9851 -0.8341 26 1 1.7630 1.9257 0.9369 27 1 0.2530 -2.2444 1.8213 28 1 3.8318 0.4736 1.2930 29 1 3.9364 -2.3743 0.1999 30 1 3.8541 -0.8895 -0.7782 31 1 5.9986 -0.1238 0.2024 32 1 6.1885 -1.7049 -0.5931 33 1 7.3079 -1.6821 1.6189 34 1 5.9538 -2.8369 1.6001 35 1 5.8485 0.0112 2.6927 36 1 5.9311 -1.4738 3.6711 37 1 3.5964 -0.6591 3.4863 38 1 3.7859 -2.2398 2.6902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257833817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -104.720880 kcal Electronic energy + Delta-G solvation = -17600.884416 eV Core-core repulsion = 14969.428299 eV Total energy + Delta-G solvation = -2631.456117 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48596 -39.75712 -36.91240 -33.67854 -32.08241 -31.50486 -28.14594 -27.76371 -25.41697 -23.29150 -22.43919 -20.90480 -20.46864 -18.34350 -16.97366 -16.52594 -16.18016 -15.66210 -15.51365 -15.14494 -14.87219 -14.50592 -14.40701 -13.76677 -13.42330 -13.09694 -13.00947 -12.86064 -12.75788 -12.68933 -12.36688 -12.18554 -11.95282 -11.92706 -11.82093 -11.77877 -11.31693 -11.03918 -10.88902 -10.54768 -10.27916 -10.15347 -8.48051 -6.15052 1.57265 1.61854 1.80256 2.60987 3.25400 3.81466 3.98415 4.00936 4.02539 4.14136 4.19971 4.33121 4.45247 4.53354 4.71735 4.74072 4.79106 4.80129 4.82952 4.89986 4.96013 4.98087 5.19354 5.22217 5.23536 5.30484 5.34287 5.37709 5.47312 5.52465 5.53163 5.63213 5.75584 5.87055 6.23758 6.33189 6.76430 7.60162 8.88738 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.011440 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.588888 B = 2447.029392 C = 3133.642507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 C -0.148 4.148 4 F -0.234 7.234 5 C 0.019 3.981 6 H 0.002 0.998 7 C -0.575 4.575 8 H 0.051 0.949 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 1.094 2.906 12 H -0.268 1.268 13 H -0.293 1.293 14 H -0.275 1.275 15 C -0.067 4.067 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.095 4.095 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.257 0.743 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 4.543 -2.532 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.088 3.912 3 C -0.206 4.206 4 F -0.215 7.215 5 C 0.000 4.000 6 H 0.020 0.980 7 C -0.613 4.613 8 H 0.069 0.931 9 C -0.215 4.215 10 N -0.570 5.570 11 Si 0.918 3.082 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.201 1.201 15 C -0.085 4.085 16 C -0.164 4.164 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.132 4.132 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.639 4.457 -1.601 8.988 hybrid contribution 0.844 -0.517 -1.015 1.417 sum 8.483 3.940 -2.616 9.713 Atomic orbital electron populations 1.22116 0.95033 1.00780 1.02285 1.21480 0.94059 0.93403 0.82228 1.22163 1.01389 0.94109 1.02906 1.92625 1.89979 1.83832 1.55104 1.19404 0.93358 0.94585 0.92630 0.97983 1.21806 1.10009 1.17209 1.12306 0.93098 1.26789 0.96934 0.95859 1.01941 1.70934 1.42625 1.14595 1.28866 0.83224 0.75365 0.75280 0.74295 1.19296 1.21955 1.20081 1.21077 0.94535 0.98716 0.94199 1.21901 0.96114 0.99045 0.99356 1.21517 0.94568 1.01205 0.97659 1.21522 1.00186 0.99055 0.94435 1.21559 0.94383 1.00763 0.98439 1.21349 0.95393 0.98694 0.97807 0.90776 0.92445 0.95087 0.91589 0.91939 0.90733 0.93205 0.91900 0.95052 0.91158 0.91612 0.91420 0.90269 0.93218 0.91673 0.91788 0.93094 0.95652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 7.92 71.98 0.57 -5.92 16 2 C 0.11 4.63 1.10 -10.80 -0.01 4.62 16 3 C -0.15 -5.44 8.11 71.98 0.58 -4.86 16 4 F -0.23 -10.27 13.75 44.97 0.62 -9.65 16 5 C 0.02 0.92 1.25 -11.54 -0.01 0.91 16 6 H 0.00 0.11 6.11 -2.38 -0.01 0.09 16 7 C -0.58 -29.04 4.96 25.60 0.13 -28.92 16 8 H 0.05 2.55 7.71 -2.91 -0.02 2.53 16 9 C -0.02 -0.82 3.80 84.66 0.32 -0.50 16 10 N -0.93 -54.16 12.99 21.45 0.28 -53.88 16 11 Si 1.09 47.74 29.91 68.60 2.05 49.79 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 15 C -0.07 -2.69 1.42 -10.79 -0.02 -2.71 16 16 C -0.13 -4.63 4.67 30.59 0.14 -4.49 16 17 C -0.11 -3.19 5.92 30.59 0.18 -3.01 16 18 C -0.11 -3.09 5.92 30.59 0.18 -2.91 16 19 C -0.11 -3.43 5.92 30.61 0.18 -3.24 16 20 C -0.09 -3.73 4.88 30.61 0.15 -3.58 16 21 H 0.07 3.54 5.93 -2.39 -0.01 3.53 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.03 1.50 7.77 -2.39 -0.02 1.48 16 24 H 0.07 2.25 6.57 -2.39 -0.02 2.23 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 2.82 7.24 -2.39 -0.02 2.80 16 27 H 0.26 15.41 6.22 -92.71 -0.58 14.84 16 28 H 0.06 2.45 6.14 -2.39 -0.01 2.43 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 2.66 5.51 -2.39 -0.01 2.64 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 2.19 7.00 -2.39 -0.02 2.17 16 38 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -56.89 281.47 6.55 -50.35 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.20 Total: 18.00 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 2.40 Total: -54.60 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.28 Total: -53.88 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 0.62 Total: -9.65 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.05 Total: 49.79 kcal Total: -56.89 6.55 -50.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257833817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.375 kcal (2) G-P(sol) polarization free energy of solvation -56.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds