Wall clock time and date at job start Mon Mar 30 2020 03:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38313 * 119.91917 * 2 1 4 4 C 1.38141 * 120.10156 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 120.03099 * 179.97438 * 4 3 2 6 6 C 1.39217 * 119.93497 * 0.28175 * 4 3 2 7 7 N 1.39324 * 120.08038 * 179.72048 * 6 4 3 8 8 C 1.36841 * 119.99803 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00000 * 0.02562 * 8 7 6 10 10 C 1.38791 * 119.99705 * 180.02562 * 8 7 6 11 11 N 1.31591 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99565 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47630 * 90.00097 * 12 10 8 14 14 H 1.48512 * 109.46694 * 209.99883 * 12 10 8 15 15 H 1.48499 * 109.47300 * 329.99757 * 12 10 8 16 16 C 1.39003 * 119.83644 * 359.48692 * 6 4 3 17 17 C 1.38300 * 119.89877 * 0.48991 * 16 6 4 18 18 F 1.35097 * 119.96905 * 179.74392 * 17 16 6 19 19 H 1.08993 * 109.47691 * 89.99479 * 1 2 3 20 20 H 1.09006 * 109.47294 * 210.00090 * 1 2 3 21 21 H 1.09003 * 109.46681 * 329.99775 * 1 2 3 22 22 H 1.08001 * 119.95464 * 0.02867 * 3 2 1 23 23 H 0.96998 * 119.99764 * 359.97438 * 7 6 4 24 24 H 0.97008 * 120.00081 * 180.02562 * 11 10 8 25 25 H 1.07994 * 120.05007 * 180.22570 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5783 1.2032 0.0005 5 17 4.4423 2.7089 -0.0001 6 6 4.2768 -0.0010 -0.0049 7 7 5.6701 -0.0001 -0.0102 8 6 6.3550 -1.1847 -0.0150 9 1 5.8156 -2.1204 -0.0150 10 6 7.7429 -1.1838 -0.0198 11 7 8.4001 -0.0438 -0.0192 12 14 8.6778 -2.8010 -0.0270 13 1 8.9208 -3.2261 -1.4289 14 1 9.9778 -2.6242 0.6690 15 1 7.8784 -3.8381 0.6733 16 6 3.5809 -1.2043 0.0000 17 6 2.1979 -1.2008 0.0000 18 9 1.5201 -2.3694 -0.0005 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6548 2.1329 0.0005 23 1 6.1545 0.8403 -0.0106 24 1 9.3701 -0.0431 -0.0230 25 1 4.1193 -2.1404 -0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258886062.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:59 Heat of formation + Delta-G solvation = -41.076265 kcal Electronic energy + Delta-G solvation = -13357.002394 eV Core-core repulsion = 10696.090084 eV Total energy + Delta-G solvation = -2660.912310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.20051 -38.55270 -35.57423 -35.46288 -32.47440 -30.19738 -29.42627 -26.12613 -24.13303 -22.04261 -20.54798 -18.10435 -17.27159 -15.62709 -15.42083 -14.97143 -14.84937 -14.17735 -13.74403 -13.15143 -13.00658 -12.57005 -12.47902 -12.06334 -11.68689 -11.47166 -11.29817 -10.90276 -10.85114 -10.53503 -10.25044 -10.00281 -9.92331 -8.87141 -7.90106 -6.89201 -6.78105 -3.95280 1.98573 2.21648 3.05746 3.05971 3.07879 3.11297 3.89042 4.27933 4.82492 4.96987 5.24403 5.52906 5.64103 5.84242 6.07350 6.20620 6.31050 6.55868 6.72501 6.81952 6.96639 7.11229 7.18164 7.47791 7.76086 8.52703 9.05502 9.27799 10.36688 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.009275 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.137443 B = 3018.187294 C = 4045.175778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.254 4.254 3 C -0.017 4.017 4 C -0.165 4.165 5 Cl -0.098 7.098 6 C 0.223 3.777 7 N -0.531 5.531 8 C -0.308 4.308 9 H 0.107 0.893 10 C 0.026 3.974 11 N -0.877 5.877 12 Si 0.937 3.063 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.250 4.250 17 C 0.159 3.841 18 F -0.151 7.151 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.120 0.880 23 H 0.408 0.592 24 H 0.280 0.720 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 0.677 0.038 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.259 4.259 3 C -0.037 4.037 4 C -0.198 4.198 5 Cl -0.070 7.070 6 C 0.095 3.905 7 N -0.130 5.130 8 C -0.438 4.438 9 H 0.125 0.875 10 C -0.180 4.180 11 N -0.512 5.512 12 Si 0.762 3.238 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.276 4.276 17 C 0.139 3.861 18 F -0.130 7.130 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.138 0.862 23 H 0.245 0.755 24 H 0.090 0.910 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.762 0.658 0.042 6.794 hybrid contribution 0.830 -0.397 -0.020 0.921 sum -5.932 0.261 0.022 5.937 Atomic orbital electron populations 1.20315 0.91543 1.01412 1.00812 1.18890 0.95487 0.91138 1.20402 1.20095 0.90869 0.96784 0.95985 1.19926 0.91801 0.84272 1.23755 1.98272 1.77659 1.33156 1.97865 1.17068 0.84545 0.91172 0.97687 1.41243 1.01002 1.09848 1.60914 1.19863 0.89441 0.86465 1.48036 0.87501 1.25427 0.96767 0.99355 0.96418 1.69702 1.09543 1.25851 1.46082 0.85740 0.78813 0.80377 0.78825 1.19884 1.20423 1.18989 1.20122 0.91416 0.97780 1.18267 1.17190 0.89286 0.80047 0.99589 1.91380 1.80495 1.47215 1.93894 0.92992 0.92717 0.92627 0.86175 0.75454 0.91000 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.83 36.01 0.35 -0.87 15 2 C -0.25 -4.61 5.89 -104.49 -0.62 -5.22 15 3 C -0.02 -0.32 9.47 -39.59 -0.37 -0.69 15 4 C -0.16 -3.37 6.34 -39.25 -0.25 -3.62 15 5 Cl -0.10 -1.87 27.60 -51.86 -1.43 -3.30 15 6 C 0.22 5.03 6.62 -83.81 -0.55 4.47 15 7 N -0.53 -13.04 5.39 -9.58 -0.05 -13.09 15 8 C -0.31 -7.74 9.56 -15.11 -0.14 -7.89 15 9 H 0.11 2.56 5.68 -52.49 -0.30 2.26 15 10 C 0.03 0.64 5.50 -17.45 -0.10 0.55 15 11 N -0.88 -22.83 13.05 55.49 0.72 -22.11 15 12 Si 0.94 19.18 29.55 -169.99 -5.02 14.15 15 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 15 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 16 C -0.25 -5.41 9.28 -39.28 -0.36 -5.78 15 17 C 0.16 3.17 7.24 -39.45 -0.29 2.88 15 18 F -0.15 -2.87 16.46 2.25 0.04 -2.84 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.05 0.77 7.63 -51.93 -0.40 0.38 15 21 H 0.05 0.70 8.08 -51.93 -0.42 0.28 15 22 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 23 H 0.41 10.25 6.56 -40.82 -0.27 9.98 15 24 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 25 H 0.13 2.86 5.96 -52.49 -0.31 2.55 15 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -25.28 241.52 -6.11 -31.39 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -1.67 Total: 8.32 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.33 Total: -16.16 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.67 Total: -35.20 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -1.43 Total: -3.30 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -25.28 -6.11 -31.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258886062.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.689 kcal (2) G-P(sol) polarization free energy of solvation -25.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds