Wall clock time and date at job start Mon Mar 30 2020 03:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38313 * 119.91917 * 2 1 4 4 C 1.38141 * 120.10156 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 120.03099 * 179.97438 * 4 3 2 6 6 C 1.39217 * 119.93497 * 0.28175 * 4 3 2 7 7 N 1.39324 * 120.08038 * 179.72048 * 6 4 3 8 8 C 1.36841 * 119.99803 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00000 * 0.02562 * 8 7 6 10 10 C 1.38791 * 119.99705 * 180.02562 * 8 7 6 11 11 N 1.31591 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99565 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47630 * 90.00097 * 12 10 8 14 14 H 1.48512 * 109.46694 * 209.99883 * 12 10 8 15 15 H 1.48499 * 109.47300 * 329.99757 * 12 10 8 16 16 C 1.39003 * 119.83644 * 359.48692 * 6 4 3 17 17 C 1.38300 * 119.89877 * 0.48991 * 16 6 4 18 18 F 1.35097 * 119.96905 * 179.74392 * 17 16 6 19 19 H 1.08993 * 109.47691 * 89.99479 * 1 2 3 20 20 H 1.09006 * 109.47294 * 210.00090 * 1 2 3 21 21 H 1.09003 * 109.46681 * 329.99775 * 1 2 3 22 22 H 1.08001 * 119.95464 * 0.02867 * 3 2 1 23 23 H 0.96998 * 119.99764 * 359.97438 * 7 6 4 24 24 H 0.97008 * 120.00081 * 180.02562 * 11 10 8 25 25 H 1.07994 * 120.05007 * 180.22570 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5783 1.2032 0.0005 5 17 4.4423 2.7089 -0.0001 6 6 4.2768 -0.0010 -0.0049 7 7 5.6701 -0.0001 -0.0102 8 6 6.3550 -1.1847 -0.0150 9 1 5.8156 -2.1204 -0.0150 10 6 7.7429 -1.1838 -0.0198 11 7 8.4001 -0.0438 -0.0192 12 14 8.6778 -2.8010 -0.0270 13 1 8.9208 -3.2261 -1.4289 14 1 9.9778 -2.6242 0.6690 15 1 7.8784 -3.8381 0.6733 16 6 3.5809 -1.2043 0.0000 17 6 2.1979 -1.2008 0.0000 18 9 1.5201 -2.3694 -0.0005 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6548 2.1329 0.0005 23 1 6.1545 0.8403 -0.0106 24 1 9.3701 -0.0431 -0.0230 25 1 4.1193 -2.1404 -0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258886062.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:59 Heat of formation + Delta-G solvation = -54.021887 kcal Electronic energy + Delta-G solvation = -13357.563758 eV Core-core repulsion = 10696.090084 eV Total energy + Delta-G solvation = -2661.473674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.77737 -40.20811 -37.18066 -37.10154 -34.18257 -31.75587 -31.03973 -27.74987 -25.76104 -23.68280 -22.13271 -19.86862 -18.91519 -17.28743 -17.04047 -16.54260 -16.48812 -15.86761 -15.37166 -14.72019 -14.56654 -14.10420 -13.80646 -13.60380 -13.21753 -13.10712 -12.70767 -12.53563 -12.46554 -12.13349 -11.92358 -11.57522 -11.51043 -10.59238 -9.51695 -8.58348 -8.57126 -5.83004 0.33930 0.62303 1.40364 1.45703 1.46118 1.53250 2.22267 2.63221 3.13902 3.16900 3.63454 3.96444 4.20578 4.51608 4.64418 4.88078 4.97050 5.11747 5.16960 5.24174 5.28820 5.43909 5.59645 5.72583 6.15178 6.71156 7.30828 7.47422 8.60116 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.009275 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.137443 B = 3018.187294 C = 4045.175778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.230 4.230 3 C -0.014 4.014 4 C -0.171 4.171 5 Cl -0.087 7.087 6 C 0.212 3.788 7 N -0.563 5.563 8 C -0.328 4.328 9 H 0.108 0.892 10 C -0.022 4.022 11 N -0.921 5.921 12 Si 1.001 2.999 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.260 1.260 16 C -0.266 4.266 17 C 0.151 3.849 18 F -0.145 7.145 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.157 0.843 23 H 0.400 0.600 24 H 0.279 0.721 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 0.770 0.038 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.235 4.235 3 C -0.033 4.033 4 C -0.204 4.204 5 Cl -0.059 7.059 6 C 0.089 3.911 7 N -0.166 5.166 8 C -0.458 4.458 9 H 0.125 0.875 10 C -0.223 4.223 11 N -0.558 5.558 12 Si 0.823 3.177 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.184 1.184 16 C -0.292 4.292 17 C 0.131 3.869 18 F -0.124 7.124 19 H 0.088 0.912 20 H 0.078 0.922 21 H 0.101 0.899 22 H 0.175 0.825 23 H 0.236 0.764 24 H 0.088 0.912 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.265 0.738 0.043 9.294 hybrid contribution 1.181 -0.337 -0.023 1.228 sum -8.084 0.401 0.020 8.094 Atomic orbital electron populations 1.20458 0.88248 1.03116 1.02485 1.19472 0.97830 0.90146 1.16072 1.20533 0.89927 0.98413 0.94449 1.20247 0.92889 0.84256 1.22996 1.98278 1.77733 1.32080 1.97799 1.17484 0.84370 0.92396 0.96860 1.41175 1.01460 1.09190 1.64737 1.20084 0.90054 0.86883 1.48745 0.87487 1.26245 0.97311 1.02332 0.96364 1.69799 1.09519 1.27603 1.48891 0.84792 0.77394 0.76740 0.78735 1.19602 1.20314 1.18360 1.20222 0.92503 0.97403 1.19075 1.17326 0.88782 0.81070 0.99705 1.91397 1.80120 1.47038 1.93808 0.91203 0.92191 0.89911 0.82544 0.76395 0.91152 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.83 71.24 0.70 -1.37 15 2 C -0.23 -7.48 5.89 -19.78 -0.12 -7.60 15 3 C -0.01 -0.45 9.47 22.26 0.21 -0.24 15 4 C -0.17 -6.74 6.34 22.48 0.14 -6.59 15 5 Cl -0.09 -3.25 27.60 -2.72 -0.08 -3.32 15 6 C 0.21 9.58 6.62 38.37 0.25 9.83 15 7 N -0.56 -28.48 5.39 -184.23 -0.99 -29.47 15 8 C -0.33 -17.06 9.56 84.04 0.80 -16.26 15 9 H 0.11 5.32 5.68 -2.91 -0.02 5.31 15 10 C -0.02 -1.13 5.50 84.86 0.47 -0.67 15 11 N -0.92 -49.80 13.05 21.65 0.28 -49.52 15 12 Si 1.00 40.32 29.55 68.60 2.03 42.34 15 13 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 14 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 15 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 16 C -0.27 -11.45 9.28 22.47 0.21 -11.24 15 17 C 0.15 5.70 7.24 22.36 0.16 5.86 15 18 F -0.14 -5.18 16.46 44.97 0.74 -4.44 15 19 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.06 1.42 7.63 -2.38 -0.02 1.40 15 21 H 0.08 1.60 8.08 -2.39 -0.02 1.58 15 22 H 0.16 4.04 8.06 -2.91 -0.02 4.02 15 23 H 0.40 20.86 6.56 -92.71 -0.61 20.25 15 24 H 0.28 14.15 8.31 -92.70 -0.77 13.38 15 25 H 0.12 5.46 5.96 -2.91 -0.02 5.45 15 Total: -1.00 -54.78 241.52 5.44 -49.34 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.63 Total: 23.35 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 2.83 Total: -28.27 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -0.71 Total: -78.99 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.74 Total: -4.44 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.32 kcal Total: -54.78 5.44 -49.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258886062.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.678 kcal (2) G-P(sol) polarization free energy of solvation -54.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds