Wall clock time and date at job start Mon Mar 30 2020 03:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00174 * 2 1 4 4 C 1.52999 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47247 * 65.00519 * 4 3 2 6 6 C 1.48568 * 110.99813 * 290.12535 * 5 4 3 7 7 C 1.54380 * 104.59389 * 200.95924 * 6 5 4 8 8 C 1.54262 * 105.06059 * 23.85278 * 7 6 5 9 9 H 1.09000 * 110.32364 * 241.00461 * 8 7 6 10 10 N 1.46497 * 110.32464 * 118.89242 * 8 7 6 11 11 C 1.46496 * 120.00235 * 301.18592 * 10 8 7 12 12 C 1.36936 * 119.99830 * 121.45195 * 10 8 7 13 13 H 1.08001 * 120.00324 * 20.43041 * 12 10 8 14 14 C 1.38814 * 120.00109 * 200.43582 * 12 10 8 15 15 N 1.31621 * 120.00163 * 14.88506 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 194.89036 * 14 12 10 17 17 H 1.48507 * 109.47199 * 85.00044 * 16 14 12 18 18 H 1.48505 * 109.47267 * 204.99797 * 16 14 12 19 19 H 1.48500 * 109.47411 * 324.99936 * 16 14 12 20 20 C 1.48562 * 110.99950 * 174.71083 * 5 4 3 21 21 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47225 * 299.99550 * 1 2 3 23 23 H 1.09004 * 109.47400 * 59.99291 * 1 2 3 24 24 H 1.09009 * 109.46590 * 60.00389 * 3 2 1 25 25 H 1.08992 * 109.47580 * 300.00492 * 3 2 1 26 26 H 1.09001 * 109.46873 * 305.00085 * 4 3 2 27 27 H 1.09004 * 109.47159 * 185.00506 * 4 3 2 28 28 H 1.08996 * 110.40674 * 82.18073 * 6 5 4 29 29 H 1.09006 * 110.51141 * 319.78926 * 6 5 4 30 30 H 1.08997 * 110.32219 * 264.95430 * 7 6 5 31 31 H 1.08997 * 110.40549 * 142.79086 * 7 6 5 32 32 H 1.08998 * 109.47952 * 95.17120 * 11 10 8 33 33 H 1.09008 * 109.46794 * 215.17199 * 11 10 8 34 34 H 1.09001 * 109.47081 * 335.16448 * 11 10 8 35 35 H 0.97001 * 120.00299 * 179.97438 * 15 14 12 36 36 H 1.08995 * 110.41299 * 40.26025 * 20 5 4 37 37 H 1.09004 * 110.40683 * 277.81282 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9769 0.5628 -1.2562 6 6 3.5900 -0.8708 -1.3051 7 6 4.5413 -1.4950 -2.3485 8 6 5.7712 -0.5643 -2.3770 9 1 5.8984 -0.1355 -3.3710 10 7 6.9753 -1.2999 -1.9830 11 6 7.0418 -1.9468 -0.6703 12 6 8.0407 -1.3782 -2.8397 13 1 8.1470 -0.6572 -3.6367 14 6 8.9842 -2.3845 -2.6838 15 7 8.7185 -3.4232 -1.9203 16 14 10.6308 -2.2644 -3.5575 17 1 11.5680 -1.4545 -2.7383 18 1 11.1905 -3.6266 -3.7483 19 1 10.4432 -1.6166 -4.8806 20 6 5.4595 0.5440 -1.3485 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8898 26 1 3.8514 0.5681 0.8409 27 1 3.9785 2.1765 0.0890 28 1 2.5534 -0.9739 -1.6260 29 1 3.7340 -1.3387 -0.3312 30 1 4.0639 -1.5218 -3.3279 31 1 4.8338 -2.4996 -2.0430 32 1 6.7524 -2.9933 -0.7658 33 1 8.0600 -1.8850 -0.2860 34 1 6.3626 -1.4433 0.0177 35 1 9.3776 -4.1265 -1.8117 36 1 5.8976 0.2989 -0.3810 37 1 5.8305 1.5060 -1.7021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259124555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:20 Heat of formation + Delta-G solvation = -31.006397 kcal Electronic energy + Delta-G solvation = -16696.795229 eV Core-core repulsion = 14088.455573 eV Total energy + Delta-G solvation = -2608.339656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27221 -38.59194 -36.67790 -33.79971 -32.02583 -29.73847 -28.69136 -27.99005 -26.97379 -24.53531 -23.38934 -21.70146 -20.62082 -18.87849 -17.51038 -17.40885 -17.11405 -16.23328 -15.95110 -15.69487 -15.13159 -14.93618 -14.49288 -14.27819 -13.94630 -13.58905 -13.03104 -12.84593 -12.71543 -12.51053 -12.45154 -12.26328 -12.19218 -12.10228 -12.03651 -11.72283 -11.65422 -11.36559 -10.62914 -10.48069 -9.41019 -8.80130 -7.82292 -5.28280 1.47559 1.49245 1.57599 2.50964 2.97354 3.06931 3.30626 3.73675 3.92414 3.96997 4.27603 4.31359 4.38318 4.49973 4.50666 4.59044 4.65034 4.70488 4.73560 4.77121 4.87480 4.91617 4.97862 5.06666 5.22873 5.26237 5.32701 5.40091 5.63191 5.68822 5.90208 6.14899 6.33179 6.34828 7.15103 7.87957 8.32315 9.21898 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.063341 B = 0.005648 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.945947 B = 4955.885117 C = 5074.962618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.070 3.930 4 C 0.041 3.959 5 N -0.508 5.508 6 C 0.066 3.934 7 C -0.140 4.140 8 C 0.167 3.833 9 H 0.065 0.935 10 N -0.608 5.608 11 C 0.186 3.814 12 C -0.264 4.264 13 H 0.074 0.926 14 C -0.055 4.055 15 N -0.941 5.941 16 Si 0.971 3.029 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.268 1.268 20 C 0.028 3.972 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.001 0.999 33 H 0.015 0.985 34 H 0.021 0.979 35 H 0.247 0.753 36 H 0.035 0.965 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 9.653 4.142 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.006 4.006 4 C -0.087 4.087 5 N -0.232 5.232 6 C -0.062 4.062 7 C -0.180 4.180 8 C 0.060 3.940 9 H 0.083 0.917 10 N -0.330 5.330 11 C 0.041 3.959 12 C -0.394 4.394 13 H 0.091 0.909 14 C -0.249 4.249 15 N -0.588 5.588 16 Si 0.799 3.201 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.193 1.193 20 C -0.102 4.102 21 H 0.106 0.894 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.446 9.678 3.749 17.788 hybrid contribution 1.249 -0.731 0.399 1.501 sum -13.198 8.946 4.149 16.475 Atomic orbital electron populations 1.22844 0.80018 1.03307 1.00685 1.87952 1.21073 1.28785 1.95481 1.22563 0.92041 0.84696 1.01333 1.22429 0.95153 1.00735 0.90424 1.65425 1.09220 1.14880 1.33682 1.22847 0.99262 0.87526 0.96566 1.22853 0.96781 0.98940 0.99470 1.21218 0.85434 0.90949 0.96443 0.91664 1.44200 1.13444 1.60969 1.14400 1.20360 0.96690 0.93985 0.84842 1.19629 1.00837 1.08319 1.10654 0.90863 1.25752 1.03084 0.95010 1.01087 1.70263 1.34780 1.09563 1.44222 0.85220 0.79952 0.76290 0.78607 1.21197 1.22263 1.19283 1.23487 0.88130 0.99827 0.98733 0.89370 0.93019 0.93439 0.90944 0.92059 0.95126 0.87798 0.89099 0.95707 0.91419 0.93724 0.98104 0.96655 0.96039 0.94341 0.94655 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -9.94 7.94 -148.98 -1.18 -11.12 16 3 C 0.07 1.45 6.24 71.98 0.45 1.90 16 4 C 0.04 1.03 5.37 86.30 0.46 1.49 16 5 N -0.51 -15.90 5.37 -881.46 -4.73 -20.64 16 6 C 0.07 2.23 5.11 86.45 0.44 2.67 16 7 C -0.14 -5.55 6.48 31.49 0.20 -5.34 16 8 C 0.17 7.18 3.54 45.89 0.16 7.34 16 9 H 0.07 2.83 7.90 -2.39 -0.02 2.81 16 10 N -0.61 -31.59 2.84 -697.77 -1.98 -33.57 16 11 C 0.19 9.69 7.83 127.77 1.00 10.69 16 12 C -0.26 -14.91 9.62 84.03 0.81 -14.10 16 13 H 0.07 3.99 7.82 -2.91 -0.02 3.96 16 14 C -0.05 -3.13 5.06 84.86 0.43 -2.70 16 15 N -0.94 -57.27 10.68 21.65 0.23 -57.04 16 16 Si 0.97 45.94 29.58 68.60 2.03 47.97 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 C 0.03 1.00 5.99 86.45 0.52 1.52 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 0.85 7.88 -2.39 -0.02 0.83 16 27 H 0.10 2.20 8.13 -2.38 -0.02 2.18 16 28 H 0.09 2.89 6.80 -2.39 -0.02 2.87 16 29 H 0.02 0.90 7.83 -2.38 -0.02 0.88 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.04 2.01 7.38 -2.39 -0.02 2.00 16 32 H 0.00 0.04 7.34 -2.39 -0.02 0.02 16 33 H 0.01 0.84 7.22 -2.38 -0.02 0.82 16 34 H 0.02 0.98 6.34 -2.39 -0.02 0.97 16 35 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.04 1.36 6.05 -2.39 -0.01 1.35 16 37 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -64.84 289.99 1.10 -63.73 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.02 Total: 5.49 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.73 Total: 5.17 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -6.49 Total: -111.25 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.18 Total: -11.12 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -64.84 1.10 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259124555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.729 kcal (2) G-P(sol) polarization free energy of solvation -64.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds