Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00114 * 2 1 4 4 C 1.53007 * 109.47025 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46957 * 64.16961 * 4 3 2 6 6 C 1.46844 * 110.99972 * 195.89163 * 5 4 3 7 7 C 1.53044 * 109.52753 * 174.16341 * 6 5 4 8 8 C 1.53117 * 109.27543 * 59.17834 * 7 6 5 9 9 C 1.53117 * 109.16217 * 302.34642 * 8 7 6 10 10 H 1.09001 * 109.50645 * 297.67861 * 9 8 7 11 11 N 1.46506 * 109.50328 * 177.59556 * 9 8 7 12 12 C 1.36934 * 119.99931 * 85.00405 * 11 9 8 13 13 H 1.08008 * 119.99855 * 359.97438 * 12 11 9 14 14 C 1.38803 * 120.00287 * 179.97438 * 12 11 9 15 15 N 1.31627 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00400 * 180.27369 * 14 12 11 17 17 H 1.48502 * 109.47457 * 179.72657 * 16 14 12 18 18 H 1.48500 * 109.46924 * 299.72691 * 16 14 12 19 19 H 1.48500 * 109.46818 * 59.72573 * 16 14 12 20 20 C 1.46846 * 110.99914 * 71.68293 * 5 4 3 21 21 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46632 * 300.00361 * 1 2 3 23 23 H 1.08999 * 109.46796 * 59.99649 * 1 2 3 24 24 H 1.08997 * 109.47470 * 60.00462 * 3 2 1 25 25 H 1.08997 * 109.47025 * 299.99996 * 3 2 1 26 26 H 1.09003 * 109.46925 * 304.17298 * 4 3 2 27 27 H 1.08991 * 109.47286 * 184.17301 * 4 3 2 28 28 H 1.09007 * 109.46434 * 54.14789 * 6 5 4 29 29 H 1.08999 * 109.45718 * 294.17215 * 6 5 4 30 30 H 1.09006 * 109.49970 * 299.24245 * 7 6 5 31 31 H 1.08997 * 109.50484 * 179.12103 * 7 6 5 32 32 H 1.08997 * 109.52041 * 182.44658 * 8 7 6 33 33 H 1.09000 * 109.57670 * 62.28760 * 8 7 6 34 34 H 0.96998 * 119.99730 * 264.99847 * 11 9 8 35 35 H 0.97003 * 120.00035 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46060 * 65.82646 * 20 5 4 37 37 H 1.08997 * 109.46785 * 305.85298 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9755 0.5446 -1.2475 6 6 5.3610 0.0710 -1.1356 7 6 5.7360 -0.7154 -2.3939 8 6 5.5836 0.1895 -3.6196 9 6 4.1443 0.7078 -3.6859 10 1 3.4602 -0.1322 -3.8069 11 7 4.0049 1.6201 -4.8237 12 6 3.7435 1.1224 -6.0723 13 1 3.6406 0.0572 -6.2184 14 6 3.6108 1.9868 -7.1502 15 7 3.7368 3.2849 -6.9723 16 14 3.2467 1.3085 -8.8522 17 1 3.1467 2.4295 -9.8210 18 1 4.3412 0.3936 -9.2650 19 1 1.9627 0.5629 -8.8236 20 6 3.8154 1.4529 -2.3902 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6888 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8525 0.5803 0.8494 27 1 3.9788 2.1775 0.0741 28 1 5.4547 -0.5746 -0.2624 29 1 6.0292 0.9255 -1.0289 30 1 5.0768 -1.5778 -2.4939 31 1 6.7694 -1.0533 -2.3173 32 1 5.8078 -0.3791 -4.5222 33 1 6.2708 1.0318 -3.5396 34 1 4.0976 2.5767 -4.6924 35 1 3.6445 3.8889 -7.7256 36 1 4.4911 2.3008 -2.2775 37 1 2.7867 1.8110 -2.4283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259208672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = -34.158717 kcal Electronic energy + Delta-G solvation = -16510.541550 eV Core-core repulsion = 13902.065200 eV Total energy + Delta-G solvation = -2608.476351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90313 -37.41426 -34.66130 -32.77348 -31.09111 -29.08118 -28.03174 -26.12406 -23.92440 -23.68967 -21.53099 -20.96575 -19.19435 -17.10821 -16.40580 -16.19836 -15.23922 -14.86916 -14.59949 -14.36835 -13.68486 -13.60386 -13.16890 -12.99266 -12.67538 -12.46817 -11.99237 -11.59193 -11.57251 -11.00202 -10.95028 -10.78057 -10.68108 -10.35807 -10.18164 -10.10312 -9.66560 -9.57323 -9.49286 -8.81699 -7.96251 -6.90886 -5.72250 -3.00522 3.47365 3.51334 3.52522 3.89164 4.11889 4.65193 5.07402 5.16248 5.31875 5.33315 5.42153 5.46170 5.49848 5.53067 5.63796 5.72135 5.75147 5.77285 5.83923 5.91419 6.00446 6.06574 6.29846 6.33877 6.48750 6.60911 6.69590 7.03951 7.15918 7.26968 7.43372 7.50529 7.75934 8.46972 9.57387 10.15660 10.50509 11.50741 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.006659 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.173741 B = 4203.904055 C = 4763.232388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.066 3.934 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.060 3.940 7 C -0.114 4.114 8 C -0.136 4.136 9 C 0.183 3.817 10 H 0.056 0.944 11 N -0.725 5.725 12 C -0.233 4.233 13 H 0.070 0.930 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.907 3.093 17 H -0.292 1.292 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.052 3.948 21 H 0.082 0.918 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.382 0.618 35 H 0.255 0.745 36 H 0.028 0.972 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -4.550 15.196 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.252 5.252 6 C -0.067 4.067 7 C -0.153 4.153 8 C -0.177 4.177 9 C 0.073 3.927 10 H 0.074 0.926 11 N -0.366 5.366 12 C -0.364 4.364 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.585 5.585 16 Si 0.738 3.262 17 H -0.218 1.218 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.076 4.076 21 H 0.101 0.899 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.215 0.785 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.368 -5.208 14.947 15.887 hybrid contribution 0.169 1.033 -0.814 1.326 sum -1.199 -4.174 14.132 14.785 Atomic orbital electron populations 1.22705 0.81914 1.02428 0.99543 1.87983 1.18706 1.27279 1.95221 1.22573 0.93649 0.85160 0.99777 1.22075 0.93686 0.97906 0.93418 1.61818 1.21698 1.39158 1.02514 1.22061 0.88097 0.97964 0.98617 1.21573 1.00075 0.98994 0.94659 1.22296 1.00310 0.98536 0.96552 1.20154 0.93627 0.93057 0.85867 0.92644 1.42377 1.85511 1.05257 1.03424 1.19209 1.40015 0.92192 0.85025 0.91177 1.24728 1.03038 0.95344 0.98002 1.69658 1.57234 1.01155 1.30465 0.86269 0.78168 0.77451 0.84335 1.21759 1.21304 1.21287 1.22436 1.00820 0.93460 0.90891 0.89925 0.94797 0.94075 0.93573 0.92885 0.90388 0.93566 0.91476 0.95501 0.91457 0.92469 0.92041 0.93142 0.78524 0.93557 0.95415 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.41 10.64 -35.23 -0.37 -5.79 16 3 C 0.07 0.84 6.08 37.16 0.23 1.07 16 4 C 0.06 0.75 5.37 -3.82 -0.02 0.73 16 5 N -0.53 -8.30 4.55 -234.66 -1.07 -9.37 16 6 C 0.06 0.87 5.44 -3.83 -0.02 0.85 16 7 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 8 C -0.14 -2.59 5.58 -26.61 -0.15 -2.74 16 9 C 0.18 3.87 2.93 -67.84 -0.20 3.67 16 10 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 11 N -0.73 -18.70 5.13 -53.34 -0.27 -18.97 16 12 C -0.23 -6.61 9.93 -15.06 -0.15 -6.76 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 14 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 15 N -0.94 -28.66 13.06 55.49 0.72 -27.93 16 16 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 C 0.05 0.95 4.77 -3.83 -0.02 0.93 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.74 6.50 -51.93 -0.34 0.40 16 26 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.05 0.56 8.06 -51.93 -0.42 0.14 16 28 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.36 6.42 -51.93 -0.33 1.03 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -31.01 297.21 -7.44 -38.44 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.42 Total: 4.67 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 0.52 Total: -3.27 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.62 Total: -56.27 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.37 Total: -5.79 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.01 -7.44 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259208672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds