Wall clock time and date at job start Mon Mar 30 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00114 * 2 1 4 4 C 1.53007 * 109.47025 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46957 * 64.16961 * 4 3 2 6 6 C 1.46844 * 110.99972 * 195.89163 * 5 4 3 7 7 C 1.53044 * 109.52753 * 174.16341 * 6 5 4 8 8 C 1.53117 * 109.27543 * 59.17834 * 7 6 5 9 9 C 1.53117 * 109.16217 * 302.34642 * 8 7 6 10 10 H 1.09001 * 109.50645 * 297.67861 * 9 8 7 11 11 N 1.46506 * 109.50328 * 177.59556 * 9 8 7 12 12 C 1.36934 * 119.99931 * 85.00405 * 11 9 8 13 13 H 1.08008 * 119.99855 * 359.97438 * 12 11 9 14 14 C 1.38803 * 120.00287 * 179.97438 * 12 11 9 15 15 N 1.31627 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00400 * 180.27369 * 14 12 11 17 17 H 1.48502 * 109.47457 * 179.72657 * 16 14 12 18 18 H 1.48500 * 109.46924 * 299.72691 * 16 14 12 19 19 H 1.48500 * 109.46818 * 59.72573 * 16 14 12 20 20 C 1.46846 * 110.99914 * 71.68293 * 5 4 3 21 21 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46632 * 300.00361 * 1 2 3 23 23 H 1.08999 * 109.46796 * 59.99649 * 1 2 3 24 24 H 1.08997 * 109.47470 * 60.00462 * 3 2 1 25 25 H 1.08997 * 109.47025 * 299.99996 * 3 2 1 26 26 H 1.09003 * 109.46925 * 304.17298 * 4 3 2 27 27 H 1.08991 * 109.47286 * 184.17301 * 4 3 2 28 28 H 1.09007 * 109.46434 * 54.14789 * 6 5 4 29 29 H 1.08999 * 109.45718 * 294.17215 * 6 5 4 30 30 H 1.09006 * 109.49970 * 299.24245 * 7 6 5 31 31 H 1.08997 * 109.50484 * 179.12103 * 7 6 5 32 32 H 1.08997 * 109.52041 * 182.44658 * 8 7 6 33 33 H 1.09000 * 109.57670 * 62.28760 * 8 7 6 34 34 H 0.96998 * 119.99730 * 264.99847 * 11 9 8 35 35 H 0.97003 * 120.00035 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46060 * 65.82646 * 20 5 4 37 37 H 1.08997 * 109.46785 * 305.85298 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9755 0.5446 -1.2475 6 6 5.3610 0.0710 -1.1356 7 6 5.7360 -0.7154 -2.3939 8 6 5.5836 0.1895 -3.6196 9 6 4.1443 0.7078 -3.6859 10 1 3.4602 -0.1322 -3.8069 11 7 4.0049 1.6201 -4.8237 12 6 3.7435 1.1224 -6.0723 13 1 3.6406 0.0572 -6.2184 14 6 3.6108 1.9868 -7.1502 15 7 3.7368 3.2849 -6.9723 16 14 3.2467 1.3085 -8.8522 17 1 3.1467 2.4295 -9.8210 18 1 4.3412 0.3936 -9.2650 19 1 1.9627 0.5629 -8.8236 20 6 3.8154 1.4529 -2.3902 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6888 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8525 0.5803 0.8494 27 1 3.9788 2.1775 0.0741 28 1 5.4547 -0.5746 -0.2624 29 1 6.0292 0.9255 -1.0289 30 1 5.0768 -1.5778 -2.4939 31 1 6.7694 -1.0533 -2.3173 32 1 5.8078 -0.3791 -4.5222 33 1 6.2708 1.0318 -3.5396 34 1 4.0976 2.5767 -4.6924 35 1 3.6445 3.8889 -7.7256 36 1 4.4911 2.3008 -2.2775 37 1 2.7867 1.8110 -2.4283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259208672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:15 Heat of formation + Delta-G solvation = -56.611250 kcal Electronic energy + Delta-G solvation = -16511.515165 eV Core-core repulsion = 13902.065200 eV Total energy + Delta-G solvation = -2609.449966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20811 -38.52076 -36.40535 -34.33382 -32.89535 -30.25787 -29.76265 -27.06973 -25.79599 -25.10637 -22.98843 -22.20900 -20.71989 -19.16264 -17.54544 -17.32798 -16.66640 -16.18255 -15.96167 -15.75356 -15.40489 -15.12491 -14.64152 -14.47256 -14.20153 -13.68533 -13.33303 -12.89324 -12.84872 -12.67355 -12.52674 -12.27952 -12.12392 -12.08332 -11.91313 -11.61554 -11.46054 -11.17634 -10.84487 -10.49274 -9.18733 -9.01607 -7.94859 -5.23648 1.46182 1.49507 1.55558 2.53934 2.87709 3.03185 3.38101 3.85604 3.98688 4.08908 4.21354 4.27831 4.29664 4.44515 4.46389 4.52562 4.55227 4.59894 4.66852 4.71138 4.84446 4.88346 4.90604 4.95896 5.06328 5.17598 5.19790 5.45835 5.49800 5.59866 6.11144 6.22758 6.29293 6.40661 7.32928 8.07774 8.32550 9.28703 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.006659 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.173741 B = 4203.904055 C = 4763.232388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.064 3.936 4 C 0.056 3.944 5 N -0.538 5.538 6 C 0.060 3.940 7 C -0.106 4.106 8 C -0.128 4.128 9 C 0.179 3.821 10 H 0.036 0.964 11 N -0.737 5.737 12 C -0.238 4.238 13 H 0.072 0.928 14 C -0.075 4.075 15 N -0.971 5.971 16 Si 0.973 3.027 17 H -0.294 1.294 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.068 3.932 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.025 0.975 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 -5.538 16.632 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.013 4.013 4 C -0.071 4.071 5 N -0.263 5.263 6 C -0.067 4.067 7 C -0.145 4.145 8 C -0.169 4.169 9 C 0.071 3.929 10 H 0.054 0.946 11 N -0.377 5.377 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.267 4.267 15 N -0.622 5.622 16 Si 0.801 3.199 17 H -0.220 1.220 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.061 4.061 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.203 0.797 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.112 -6.236 16.423 17.603 hybrid contribution 0.070 1.300 -1.178 1.756 sum -1.042 -4.936 15.245 16.059 Atomic orbital electron populations 1.22850 0.80541 1.03394 1.00184 1.87931 1.20370 1.28198 1.95390 1.22646 0.93656 0.84804 1.00220 1.22198 0.93789 0.98769 0.92371 1.61801 1.22893 1.38800 1.02828 1.22138 0.87266 0.98451 0.98862 1.21529 1.01718 0.97998 0.93230 1.22123 0.98179 0.98735 0.97833 1.20304 0.94589 0.92020 0.85996 0.94586 1.42544 1.85692 1.05331 1.04093 1.19546 1.38885 0.92338 0.86264 0.91043 1.25539 1.03740 0.95666 1.01776 1.69814 1.58843 1.02308 1.31231 0.85224 0.78264 0.76756 0.79620 1.21962 1.20400 1.20484 1.22101 0.99965 0.93329 0.90665 0.88903 0.92629 0.94913 0.90790 0.94730 0.88508 0.92308 0.88723 0.94889 0.91846 0.89834 0.94036 0.93788 0.79736 0.94000 0.95644 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -10.97 10.64 -148.98 -1.58 -12.55 16 3 C 0.06 1.53 6.08 71.98 0.44 1.97 16 4 C 0.06 1.33 5.37 86.31 0.46 1.79 16 5 N -0.54 -16.02 4.55 -896.34 -4.08 -20.10 16 6 C 0.06 1.55 5.44 86.33 0.47 2.02 16 7 C -0.11 -3.04 6.09 30.65 0.19 -2.86 16 8 C -0.13 -4.85 5.58 30.67 0.17 -4.68 16 9 C 0.18 7.70 2.93 45.04 0.13 7.83 16 10 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 11 N -0.74 -38.96 5.13 -322.67 -1.65 -40.61 16 12 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 13 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 14 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 15 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 16 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 C 0.07 2.47 4.77 86.33 0.41 2.88 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 0.95 6.50 -2.39 -0.02 0.93 16 26 H 0.10 1.95 7.87 -2.39 -0.02 1.93 16 27 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 28 H 0.09 1.99 7.96 -2.38 -0.02 1.97 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.37 20.85 7.80 -92.71 -0.72 20.13 16 35 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 2.32 6.42 -2.39 -0.02 2.31 16 Total: -1.00 -66.68 297.21 0.12 -66.56 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.30 Total: 23.90 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.82 Total: -6.12 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.45 Total: -120.99 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -1.58 Total: -12.55 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -66.68 0.12 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259208672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.949 kcal (2) G-P(sol) polarization free energy of solvation -66.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds