Wall clock time and date at job start Mon Mar 30 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99867 * 2 1 4 4 C 1.53000 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.46914 * 65.00069 * 4 3 2 6 6 C 1.46842 * 110.99676 * 66.04932 * 5 4 3 7 7 C 1.53036 * 109.52190 * 185.84074 * 6 5 4 8 8 C 1.53123 * 109.27788 * 300.81892 * 7 6 5 9 9 C 1.53123 * 109.16001 * 57.65365 * 8 7 6 10 10 H 1.08998 * 109.53365 * 62.30832 * 9 8 7 11 11 N 1.46494 * 109.50140 * 182.40309 * 9 8 7 12 12 C 1.36935 * 120.00572 * 274.80526 * 11 9 8 13 13 H 1.07999 * 119.99530 * 359.97438 * 12 11 9 14 14 C 1.38809 * 120.00584 * 180.02562 * 12 11 9 15 15 N 1.31625 * 119.99947 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00398 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46545 * 59.99848 * 16 14 12 18 18 H 1.48498 * 109.47168 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47178 * 300.00234 * 16 14 12 20 20 C 1.46848 * 110.99958 * 190.25994 * 5 4 3 21 21 H 1.09005 * 109.46967 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46753 * 299.98988 * 1 2 3 23 23 H 1.08993 * 109.47728 * 59.99270 * 1 2 3 24 24 H 1.09001 * 109.47313 * 60.00748 * 3 2 1 25 25 H 1.08995 * 109.47603 * 300.00761 * 3 2 1 26 26 H 1.09004 * 109.47111 * 305.00859 * 4 3 2 27 27 H 1.08994 * 109.47567 * 185.00303 * 4 3 2 28 28 H 1.09002 * 109.46766 * 65.82407 * 6 5 4 29 29 H 1.09000 * 109.45508 * 305.84586 * 6 5 4 30 30 H 1.09000 * 109.50632 * 60.76184 * 7 6 5 31 31 H 1.09006 * 109.50216 * 180.87978 * 7 6 5 32 32 H 1.09000 * 109.52561 * 177.56017 * 8 7 6 33 33 H 1.09007 * 109.52268 * 297.75177 * 8 7 6 34 34 H 0.97002 * 119.99752 * 94.80462 * 11 9 8 35 35 H 0.96991 * 120.00292 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.46014 * 294.17985 * 20 5 4 37 37 H 1.08995 * 109.46374 * 54.14015 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2562 6 6 3.6950 1.4354 -2.4031 7 6 4.0325 0.6987 -3.7014 8 6 5.5118 0.3033 -3.6884 9 6 5.7892 -0.5650 -2.4580 10 1 5.2019 -1.4812 -2.5186 11 7 7.2143 -0.9000 -2.4071 12 6 7.6900 -1.9770 -3.1064 13 1 7.0143 -2.5797 -3.6951 14 6 9.0403 -2.2949 -3.0578 15 7 9.8636 -1.5613 -2.3390 16 14 9.6890 -3.7645 -4.0112 17 1 9.4170 -3.5745 -5.4586 18 1 11.1530 -3.8877 -3.7950 19 1 9.0126 -4.9990 -3.5382 20 6 5.4007 0.2084 -1.1959 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 1.6887 1.8463 0.8900 25 1 1.6885 1.8464 -0.8898 26 1 3.8515 0.5681 0.8409 27 1 3.9785 2.1765 0.0890 28 1 4.3009 2.3385 -2.3300 29 1 2.6390 1.7055 -2.4030 30 1 3.4171 -0.1973 -3.7819 31 1 3.8380 1.3522 -4.5518 32 1 5.7464 -0.2596 -4.5918 33 1 6.1285 1.2012 -3.6470 34 1 7.8212 -0.3590 -1.8780 35 1 10.8071 -1.7836 -2.3047 36 1 5.9986 1.1172 -1.1283 37 1 5.5835 -0.4124 -0.3188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259208674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:17 Heat of formation + Delta-G solvation = -55.791042 kcal Electronic energy + Delta-G solvation = -16395.933072 eV Core-core repulsion = 13786.518673 eV Total energy + Delta-G solvation = -2609.414399 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22416 -38.52958 -36.40888 -34.31091 -32.81461 -30.67853 -29.39334 -27.04073 -25.94542 -24.73888 -23.52493 -21.90655 -20.71844 -19.15389 -17.54266 -17.30536 -16.69957 -16.29943 -15.85677 -15.60943 -15.30660 -15.23443 -14.78463 -14.41085 -14.32382 -13.53554 -13.32639 -12.89583 -12.83589 -12.69511 -12.51780 -12.27870 -12.10552 -12.02984 -11.85969 -11.72173 -11.46512 -11.13497 -10.85123 -10.45281 -9.19179 -9.00699 -7.93740 -5.22679 1.47161 1.50661 1.56660 2.54829 2.88819 3.02728 3.39242 3.89256 3.99074 4.05327 4.20585 4.22897 4.30302 4.45161 4.48402 4.55678 4.56462 4.62653 4.66683 4.70675 4.81626 4.87413 4.93453 4.99476 5.05106 5.16459 5.18682 5.46035 5.50539 5.59769 6.11840 6.21014 6.30172 6.45587 7.33944 8.08743 8.33470 9.29813 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.005408 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.055853 B = 5176.147465 C = 5251.763270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.068 3.932 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.057 3.943 7 C -0.106 4.106 8 C -0.128 4.128 9 C 0.178 3.822 10 H 0.038 0.962 11 N -0.737 5.737 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.075 4.075 15 N -0.971 5.971 16 Si 0.973 3.027 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.279 1.279 20 C 0.070 3.930 21 H 0.086 0.914 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.026 0.974 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 8.513 3.128 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.008 4.008 4 C -0.076 4.076 5 N -0.262 5.262 6 C -0.070 4.070 7 C -0.144 4.144 8 C -0.168 4.168 9 C 0.070 3.930 10 H 0.056 0.944 11 N -0.377 5.377 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.267 4.267 15 N -0.622 5.622 16 Si 0.802 3.198 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.205 1.205 20 C -0.059 4.059 21 H 0.105 0.895 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.203 0.797 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.712 7.756 2.969 20.472 hybrid contribution 1.361 0.264 -0.126 1.392 sum -17.351 8.021 2.843 19.325 Atomic orbital electron populations 1.22861 0.80245 1.03257 1.00608 1.87999 1.20671 1.28484 1.95458 1.22640 0.92205 0.84803 1.01169 1.22210 0.94811 0.98490 0.92046 1.61805 1.16545 1.44338 1.03553 1.22184 1.01401 0.93371 0.90055 1.21519 0.94908 1.00714 0.97280 1.22119 0.96516 0.99104 0.99046 1.20317 0.84082 0.95483 0.93126 0.94431 1.42550 1.04073 1.33366 1.57742 1.19550 0.92211 1.04237 1.21098 0.91007 1.25543 0.96478 1.02425 1.02236 1.69812 1.03376 1.42656 1.46333 0.85214 0.76672 0.79407 0.78505 1.20394 1.21992 1.20468 1.22059 0.87840 0.97909 0.98118 0.89541 0.93029 0.93436 0.91043 0.92226 0.90891 0.92011 0.94897 0.88888 0.91884 0.89854 0.93977 0.93775 0.79713 0.94016 0.95555 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.08 10.65 -148.98 -1.59 -11.67 16 3 C 0.07 1.35 6.00 71.98 0.43 1.78 16 4 C 0.05 1.25 5.35 86.30 0.46 1.71 16 5 N -0.54 -16.12 4.60 -896.37 -4.13 -20.25 16 6 C 0.06 1.47 5.30 86.33 0.46 1.93 16 7 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 8 C -0.13 -4.81 5.59 30.68 0.17 -4.64 16 9 C 0.18 7.69 2.93 45.04 0.13 7.82 16 10 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 11 N -0.74 -39.23 5.12 -322.71 -1.65 -40.88 16 12 C -0.24 -13.84 9.93 84.03 0.83 -13.00 16 13 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 14 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 15 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 16 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 C 0.07 2.55 4.93 86.32 0.43 2.97 16 21 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.03 6.23 -2.39 -0.01 1.02 16 26 H 0.07 1.89 7.98 -2.39 -0.02 1.87 16 27 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 1.95 6.13 -2.39 -0.01 1.93 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.37 20.98 7.80 -92.71 -0.72 20.26 16 35 H 0.25 15.23 8.31 -92.72 -0.77 14.45 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 2.35 8.01 -2.39 -0.02 2.33 16 Total: -1.00 -67.32 296.85 0.06 -67.26 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.30 Total: 23.20 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.82 Total: -6.52 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.50 Total: -121.63 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.59 Total: -11.67 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -67.32 0.06 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259208674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.470 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds