Wall clock time and date at job start Mon Mar 30 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46952 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46700 * 180.02562 * 5 4 3 7 7 C 1.47433 * 111.00450 * 69.87239 * 6 5 4 8 8 C 1.54317 * 107.23689 * 123.25843 * 7 6 5 9 9 C 1.55148 * 103.01725 * 22.28184 * 8 7 6 10 10 H 1.08996 * 110.98511 * 82.48022 * 9 8 7 11 11 N 1.46502 * 110.98980 * 206.25747 * 9 8 7 12 12 C 1.36937 * 119.99821 * 273.54375 * 11 9 8 13 13 H 1.08005 * 120.00412 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99985 * 179.97438 * 12 11 9 15 15 N 1.31614 * 120.00101 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99787 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47271 * 89.99894 * 16 14 12 18 18 H 1.48497 * 109.47206 * 209.99630 * 16 14 12 19 19 H 1.48500 * 109.47302 * 329.99856 * 16 14 12 20 20 C 1.47848 * 110.99896 * 190.71938 * 6 5 4 21 21 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 25 25 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 26 26 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 27 27 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 28 28 H 1.08996 * 109.47094 * 299.99658 * 5 4 3 29 29 H 1.08995 * 109.47498 * 60.00027 * 5 4 3 30 30 H 1.09001 * 109.89092 * 242.66572 * 7 6 5 31 31 H 1.09003 * 109.88993 * 3.69238 * 7 6 5 32 32 H 1.09003 * 110.71189 * 140.66400 * 8 7 6 33 33 H 1.09005 * 110.70521 * 263.73010 * 8 7 6 34 34 H 0.96992 * 119.99922 * 93.55240 * 11 9 8 35 35 H 0.96997 * 120.00277 * 180.02562 * 15 14 12 36 36 H 1.09005 * 110.37198 * 332.45792 * 20 6 5 37 37 H 1.08997 * 110.37667 * 94.80419 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6221 2.4665 -0.0012 7 6 6.1105 1.9537 -1.2943 8 6 7.1133 2.9882 -1.8472 9 6 7.5648 3.7520 -0.5744 10 1 8.3507 3.2076 -0.0508 11 7 8.0021 5.1105 -0.9051 12 6 9.2974 5.3391 -1.2863 13 1 9.9965 4.5179 -1.3436 14 6 9.7116 6.6263 -1.6002 15 7 10.9563 6.8460 -1.9671 16 14 8.5023 8.0466 -1.5019 17 1 8.5387 8.6343 -0.1385 18 1 8.8744 9.0834 -2.4978 19 1 7.1325 7.5515 -1.7911 20 6 6.2575 3.7765 0.2561 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 3.8574 0.6437 0.8891 27 1 3.8567 0.6441 -0.8909 28 1 3.8357 3.1239 -0.8895 29 1 3.8364 3.1229 0.8904 30 1 6.6088 0.9953 -1.1489 31 1 5.2760 1.8364 -1.9858 32 1 7.9605 2.4900 -2.3186 33 1 6.6237 3.6617 -2.5507 34 1 7.3743 5.8480 -0.8540 35 1 11.2459 7.7455 -2.1860 36 1 5.6091 4.5854 -0.0808 37 1 6.4837 3.8868 1.3166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259224140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:00 Heat of formation + Delta-G solvation = -31.406897 kcal Electronic energy + Delta-G solvation = -15848.931227 eV Core-core repulsion = 13240.574204 eV Total energy + Delta-G solvation = -2608.357023 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96829 -38.03332 -34.90088 -32.96843 -31.10940 -29.48682 -27.93071 -26.76178 -24.51150 -22.88413 -21.93165 -20.48790 -19.68231 -17.65287 -16.70299 -16.47363 -15.70449 -15.63881 -14.92473 -14.44564 -13.98048 -13.61572 -13.26898 -13.03237 -12.73934 -12.53827 -11.99722 -11.85398 -11.73328 -11.31130 -11.20886 -10.97770 -10.90971 -10.75800 -10.55688 -10.34640 -9.97129 -9.91909 -9.60817 -8.94014 -8.15164 -7.29738 -5.79164 -3.15431 3.34991 3.37708 3.41482 3.43650 4.20702 4.56579 4.78015 4.89551 5.01430 5.05247 5.10767 5.15583 5.22441 5.29411 5.35141 5.40431 5.45753 5.59515 5.61777 5.71255 5.79543 5.97106 6.01929 6.10079 6.12679 6.31573 6.44336 6.70676 6.89229 6.90437 7.16130 7.26722 7.97344 8.40055 9.17606 9.90047 10.09343 11.39119 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.056128 B = 0.004475 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.742375 B = 6256.150320 C = 6537.867202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.113 4.113 5 C 0.055 3.945 6 N -0.527 5.527 7 C 0.042 3.958 8 C -0.162 4.162 9 C 0.179 3.821 10 H 0.071 0.929 11 N -0.743 5.743 12 C -0.244 4.244 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.885 3.115 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.034 3.966 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.043 0.957 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.286 -10.533 3.757 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.074 4.074 6 N -0.251 5.251 7 C -0.086 4.086 8 C -0.204 4.204 9 C 0.068 3.932 10 H 0.089 0.911 11 N -0.385 5.385 12 C -0.374 4.374 13 H 0.109 0.891 14 C -0.191 4.191 15 N -0.581 5.581 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.095 4.095 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.779 -11.047 4.098 22.169 hybrid contribution -1.309 1.939 -0.740 2.454 sum -20.088 -9.108 3.358 22.310 Atomic orbital electron populations 1.22732 0.81187 1.02665 0.99915 1.87880 1.19568 1.28244 1.95415 1.22526 0.94472 0.84453 1.00065 1.21474 0.91848 0.97706 1.04092 1.22118 0.88678 0.95859 1.00755 1.63509 1.04759 1.25224 1.31634 1.22835 0.97685 0.99024 0.89086 1.23451 0.98578 0.97879 1.00467 1.21261 0.93279 0.86781 0.91891 0.91087 1.42671 1.10361 1.03075 1.82370 1.19075 0.85716 0.94837 1.37736 0.89068 1.24675 0.95990 0.97037 1.01386 1.69696 1.15319 1.20872 1.52174 0.86550 0.80957 0.83342 0.77656 1.20981 1.21697 1.20504 1.23269 0.96106 0.89056 1.01035 0.94159 0.94131 0.89688 0.93492 0.93270 0.90244 0.91076 0.94755 0.90935 0.90851 0.93380 0.91169 0.91890 0.80638 0.93010 0.93873 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.30 10.70 -35.23 -0.38 -4.68 16 3 C 0.06 0.61 5.94 37.16 0.22 0.83 16 4 C -0.11 -1.24 5.61 -26.73 -0.15 -1.39 16 5 C 0.05 0.66 4.54 -3.83 -0.02 0.64 16 6 N -0.53 -7.65 5.16 -231.26 -1.19 -8.84 16 7 C 0.04 0.61 6.21 -2.84 -0.02 0.59 16 8 C -0.16 -2.86 6.64 -24.90 -0.17 -3.02 16 9 C 0.18 3.49 3.68 -65.79 -0.24 3.25 16 10 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 11 N -0.74 -17.61 5.08 -51.36 -0.26 -17.87 16 12 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 13 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 14 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 15 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 16 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 20 C 0.03 0.55 6.31 -2.30 -0.01 0.53 16 21 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16 28 H 0.03 0.42 7.96 -51.93 -0.41 0.00 16 29 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.64 6.91 -51.93 -0.36 0.28 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.36 8.38 5.57 -40.82 -0.23 8.16 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.04 0.70 7.67 -51.93 -0.40 0.30 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -31.13 298.51 -7.23 -38.35 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.43 Total: 3.95 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 0.47 Total: -4.21 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.68 Total: -55.26 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.13 -7.23 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259224140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.947 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds