Wall clock time and date at job start Mon Mar 30 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46952 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46700 * 180.02562 * 5 4 3 7 7 C 1.47433 * 111.00450 * 69.87239 * 6 5 4 8 8 C 1.54317 * 107.23689 * 123.25843 * 7 6 5 9 9 C 1.55148 * 103.01725 * 22.28184 * 8 7 6 10 10 H 1.08996 * 110.98511 * 82.48022 * 9 8 7 11 11 N 1.46502 * 110.98980 * 206.25747 * 9 8 7 12 12 C 1.36937 * 119.99821 * 273.54375 * 11 9 8 13 13 H 1.08005 * 120.00412 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99985 * 179.97438 * 12 11 9 15 15 N 1.31614 * 120.00101 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99787 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47271 * 89.99894 * 16 14 12 18 18 H 1.48497 * 109.47206 * 209.99630 * 16 14 12 19 19 H 1.48500 * 109.47302 * 329.99856 * 16 14 12 20 20 C 1.47848 * 110.99896 * 190.71938 * 6 5 4 21 21 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 25 25 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 26 26 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 27 27 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 28 28 H 1.08996 * 109.47094 * 299.99658 * 5 4 3 29 29 H 1.08995 * 109.47498 * 60.00027 * 5 4 3 30 30 H 1.09001 * 109.89092 * 242.66572 * 7 6 5 31 31 H 1.09003 * 109.88993 * 3.69238 * 7 6 5 32 32 H 1.09003 * 110.71189 * 140.66400 * 8 7 6 33 33 H 1.09005 * 110.70521 * 263.73010 * 8 7 6 34 34 H 0.96992 * 119.99922 * 93.55240 * 11 9 8 35 35 H 0.96997 * 120.00277 * 180.02562 * 15 14 12 36 36 H 1.09005 * 110.37198 * 332.45792 * 20 6 5 37 37 H 1.08997 * 110.37667 * 94.80419 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6221 2.4665 -0.0012 7 6 6.1105 1.9537 -1.2943 8 6 7.1133 2.9882 -1.8472 9 6 7.5648 3.7520 -0.5744 10 1 8.3507 3.2076 -0.0508 11 7 8.0021 5.1105 -0.9051 12 6 9.2974 5.3391 -1.2863 13 1 9.9965 4.5179 -1.3436 14 6 9.7116 6.6263 -1.6002 15 7 10.9563 6.8460 -1.9671 16 14 8.5023 8.0466 -1.5019 17 1 8.5387 8.6343 -0.1385 18 1 8.8744 9.0834 -2.4978 19 1 7.1325 7.5515 -1.7911 20 6 6.2575 3.7765 0.2561 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 3.8574 0.6437 0.8891 27 1 3.8567 0.6441 -0.8909 28 1 3.8357 3.1239 -0.8895 29 1 3.8364 3.1229 0.8904 30 1 6.6088 0.9953 -1.1489 31 1 5.2760 1.8364 -1.9858 32 1 7.9605 2.4900 -2.3186 33 1 6.6237 3.6617 -2.5507 34 1 7.3743 5.8480 -0.8540 35 1 11.2459 7.7455 -2.1860 36 1 5.6091 4.5854 -0.0808 37 1 6.4837 3.8868 1.3166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259224140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:00 Heat of formation + Delta-G solvation = -54.426312 kcal Electronic energy + Delta-G solvation = -15849.929424 eV Core-core repulsion = 13240.574204 eV Total energy + Delta-G solvation = -2609.355220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20178 -38.82589 -36.51857 -34.43231 -32.91922 -30.75663 -29.32904 -27.56753 -25.61344 -24.71407 -22.90736 -21.91742 -21.00126 -19.71733 -17.60580 -17.32790 -16.93468 -16.71982 -16.18815 -15.92214 -15.17434 -14.98913 -14.72244 -14.44018 -14.31915 -13.72728 -13.33303 -13.17203 -12.74168 -12.70070 -12.63298 -12.16421 -12.13042 -12.04099 -11.95868 -11.84172 -11.72328 -11.49360 -10.98664 -10.60354 -9.37390 -9.27580 -8.03981 -5.38707 1.36394 1.40752 1.47610 2.47075 2.62309 3.13261 3.26741 3.65071 3.79101 3.97228 4.04538 4.24552 4.26930 4.33755 4.37678 4.45233 4.53124 4.56061 4.60178 4.61409 4.71289 4.74851 4.86586 4.96352 5.03094 5.16857 5.25641 5.30721 5.38559 5.73887 5.94863 6.13068 6.20492 6.26787 7.05000 7.79907 7.99838 9.17578 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.056128 B = 0.004475 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.742375 B = 6256.150320 C = 6537.867202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.106 4.106 5 C 0.055 3.945 6 N -0.531 5.531 7 C 0.052 3.948 8 C -0.157 4.157 9 C 0.165 3.835 10 H 0.055 0.945 11 N -0.745 5.745 12 C -0.232 4.232 13 H 0.055 0.945 14 C -0.064 4.064 15 N -0.984 5.984 16 Si 0.958 3.042 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.253 1.253 20 C 0.047 3.953 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.366 0.634 35 H 0.258 0.742 36 H 0.050 0.950 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.323 -10.493 4.290 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.144 4.144 5 C -0.073 4.073 6 N -0.255 5.255 7 C -0.076 4.076 8 C -0.198 4.198 9 C 0.056 3.944 10 H 0.073 0.927 11 N -0.388 5.388 12 C -0.363 4.363 13 H 0.073 0.927 14 C -0.256 4.256 15 N -0.634 5.634 16 Si 0.785 3.215 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.178 1.178 20 C -0.082 4.082 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.873 -11.057 4.649 24.946 hybrid contribution -0.348 1.794 -0.893 2.034 sum -22.221 -9.263 3.756 24.366 Atomic orbital electron populations 1.22920 0.79534 1.03765 1.00845 1.87834 1.21469 1.28920 1.95619 1.22512 0.93452 0.84361 1.01048 1.21364 0.92897 0.96775 1.03339 1.22184 0.86803 0.96718 1.01597 1.63540 1.06478 1.24050 1.31447 1.22768 0.97404 0.98093 0.89371 1.23308 0.99000 0.98280 0.99241 1.21461 0.94648 0.84820 0.93466 0.92728 1.42605 1.08729 1.05036 1.82396 1.19004 0.87074 0.93848 1.36385 0.92665 1.25530 0.98004 1.00182 1.01859 1.69885 1.17840 1.21460 1.54263 0.85368 0.79441 0.79061 0.77622 1.20170 1.22253 1.17765 1.23096 0.94210 0.90243 1.00635 0.93289 0.93098 0.88647 0.92655 0.92103 0.91060 0.91769 0.94266 0.89687 0.90173 0.91593 0.92359 0.92625 0.80021 0.93271 0.93170 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.29 10.70 -148.98 -1.59 -9.88 16 3 C 0.06 1.06 5.94 71.99 0.43 1.49 16 4 C -0.11 -2.05 5.61 30.60 0.17 -1.88 16 5 C 0.06 1.15 4.54 86.30 0.39 1.54 16 6 N -0.53 -14.07 5.16 -885.58 -4.57 -18.63 16 7 C 0.05 1.39 6.21 86.65 0.54 1.93 16 8 C -0.16 -5.40 6.64 31.78 0.21 -5.19 16 9 C 0.17 6.35 3.68 46.38 0.17 6.52 16 10 H 0.05 2.27 8.13 -2.39 -0.02 2.25 16 11 N -0.74 -34.81 5.08 -316.39 -1.61 -36.42 16 12 C -0.23 -13.32 10.47 84.03 0.88 -12.44 16 13 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 14 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 15 N -0.98 -63.47 13.97 21.65 0.30 -63.16 16 16 Si 0.96 45.31 27.74 68.60 1.90 47.21 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 20 C 0.05 1.41 6.31 86.77 0.55 1.96 16 21 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 22 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.33 7.14 -2.39 -0.02 1.31 16 28 H 0.04 0.81 7.96 -2.39 -0.02 0.79 16 29 H 0.08 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.57 6.91 -2.39 -0.02 1.55 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.37 16.25 5.57 -92.71 -0.52 15.73 16 35 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.05 1.46 7.67 -2.38 -0.02 1.44 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -67.29 298.51 -0.06 -67.36 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.45 Total: 21.38 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.05 Total: -7.85 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.87 Total: -118.22 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.59 Total: -9.88 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Total: -67.29 -0.06 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259224140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.931 kcal (2) G-P(sol) polarization free energy of solvation -67.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds