Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33220 * 119.92752 * 2 1 4 4 C 1.31699 * 121.35984 * 179.75176 * 3 2 1 5 5 N 1.37048 * 119.45622 * 180.26126 * 4 3 2 6 6 N 1.36583 * 121.09074 * 0.54004 * 4 3 2 7 7 C 1.37240 * 120.13508 * 179.74838 * 6 4 3 8 8 H 1.08004 * 119.99764 * 40.61486 * 7 6 4 9 9 C 1.39069 * 120.00384 * 220.61575 * 7 6 4 10 10 N 1.31257 * 119.99730 * 23.14394 * 9 7 6 11 11 Si 1.86797 * 120.00108 * 203.14386 * 9 7 6 12 12 H 1.48503 * 109.47227 * 269.99549 * 11 9 7 13 13 H 1.48496 * 109.47339 * 30.00156 * 11 9 7 14 14 H 1.48507 * 109.46902 * 150.00066 * 11 9 7 15 15 C 1.35022 * 119.73370 * 359.46926 * 6 4 3 16 16 O 1.22020 * 120.63680 * 180.27437 * 15 6 4 17 17 C 1.36549 * 119.93063 * 180.02562 * 2 1 3 18 18 Cl 1.73601 * 120.52569 * 359.97438 * 17 2 1 19 19 H 1.09000 * 109.47181 * 269.97203 * 1 2 3 20 20 H 1.09001 * 109.47409 * 29.98180 * 1 2 3 21 21 H 1.09006 * 109.46984 * 149.97232 * 1 2 3 22 22 H 0.97001 * 120.00032 * 180.27232 * 5 4 3 23 23 H 0.96999 * 120.00350 * 0.27217 * 5 4 3 24 24 H 0.97004 * 120.00618 * 5.54156 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1716 1.1546 0.0000 4 6 3.4881 1.1875 0.0049 5 7 4.1320 2.3973 0.0101 6 7 4.2225 0.0359 -0.0009 7 6 5.5937 0.0931 -0.0009 8 1 6.1037 0.8220 0.6115 9 6 6.3265 -0.7875 -0.7893 10 7 5.7722 -1.3432 -1.8413 11 14 8.0996 -1.1793 -0.3513 12 1 9.0018 -0.2134 -1.0282 13 1 8.2801 -1.0784 1.1192 14 1 8.4265 -2.5577 -0.7967 15 6 3.5940 -1.1591 -0.0009 16 8 4.2338 -2.1982 -0.0010 17 6 2.1882 -1.1834 -0.0005 18 17 1.3322 -2.6937 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5143 22 1 5.1015 2.4307 0.0097 23 1 3.6184 3.2201 0.0142 24 1 4.8798 -1.0797 -2.1156 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259524490.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -21.979660 kcal Electronic energy + Delta-G solvation = -14183.415444 eV Core-core repulsion = 11543.251186 eV Total energy + Delta-G solvation = -2640.164257 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.47762 -38.62115 -37.79081 -36.51507 -35.14770 -33.63724 -31.29187 -29.43381 -26.69272 -24.18665 -23.30819 -20.66363 -19.81361 -18.27191 -17.61055 -17.18046 -16.74108 -15.85714 -15.65447 -15.49053 -14.71667 -14.18181 -14.04342 -13.63982 -13.30731 -12.75294 -12.66194 -12.27861 -12.02340 -11.88518 -11.36423 -11.09502 -11.06599 -10.63022 -10.20582 -9.07509 -8.66553 -6.65850 0.09508 1.18200 1.32469 1.49596 1.60705 1.76216 2.03526 2.40107 2.73466 2.79233 3.13009 3.68518 3.95672 4.47801 4.79434 4.81166 4.92662 5.25735 5.39222 5.56331 5.89343 6.05432 6.43833 6.58373 6.81214 7.34405 7.53375 8.23124 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.012055 C = 0.009193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.629601 B = 2322.171656 C = 3045.018855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.219 3.781 3 N -0.596 5.596 4 C 0.578 3.422 5 N -0.791 5.791 6 N -0.379 5.379 7 C -0.480 4.480 8 H 0.121 0.879 9 C 0.008 3.992 10 N -0.834 5.834 11 Si 1.130 2.870 12 H -0.245 1.245 13 H -0.265 1.265 14 H -0.294 1.294 15 C 0.482 3.518 16 O -0.574 6.574 17 C -0.312 4.312 18 Cl -0.059 7.059 19 H 0.100 0.900 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.423 0.577 23 H 0.429 0.571 24 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 8.307 3.195 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.086 3.914 3 N -0.333 5.333 4 C 0.226 3.774 5 N -0.343 5.343 6 N -0.088 5.088 7 C -0.605 4.605 8 H 0.138 0.862 9 C -0.204 4.204 10 N -0.461 5.461 11 Si 0.947 3.053 12 H -0.169 1.169 13 H -0.190 1.190 14 H -0.220 1.220 15 C 0.285 3.715 16 O -0.456 6.456 17 C -0.349 4.349 18 Cl -0.031 7.031 19 H 0.118 0.882 20 H 0.114 0.886 21 H 0.101 0.899 22 H 0.257 0.743 23 H 0.264 0.736 24 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.572 7.223 2.726 8.506 hybrid contribution -0.856 -0.024 0.312 0.911 sum -4.428 7.199 3.038 8.981 Atomic orbital electron populations 1.20801 0.85166 1.04547 1.04613 1.21110 0.98501 0.85085 0.86739 1.68058 1.02419 1.26941 1.35910 1.19839 0.86292 0.82969 0.88331 1.41555 1.10847 1.02671 1.79255 1.42639 1.08809 1.04545 1.52811 1.20801 0.79164 1.27661 1.32917 0.86166 1.28057 1.10392 0.91342 0.90644 1.70591 1.15874 1.38211 1.21409 0.82816 0.68157 0.77194 0.77089 1.16934 1.18977 1.22017 1.17173 0.88515 0.83934 0.81925 1.90819 1.68864 1.31626 1.54265 1.21795 0.91374 0.89028 1.32738 1.98202 1.74835 1.32103 1.97997 0.88206 0.88552 0.89930 0.74280 0.73635 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.79 71.23 0.70 -1.96 14 2 C 0.22 8.71 6.77 41.95 0.28 8.99 14 3 N -0.60 -23.44 10.35 -185.59 -1.92 -25.37 14 4 C 0.58 24.03 8.43 260.60 2.20 26.23 14 5 N -0.79 -23.85 8.88 -58.66 -0.52 -24.37 14 6 N -0.38 -19.21 2.46 -478.43 -1.18 -20.39 14 7 C -0.48 -24.27 8.23 84.05 0.69 -23.58 14 8 H 0.12 5.31 7.12 -2.91 -0.02 5.29 14 9 C 0.01 0.41 4.24 84.98 0.36 0.77 14 10 N -0.83 -50.10 12.22 21.68 0.26 -49.83 14 11 Si 1.13 46.54 29.98 68.60 2.06 48.60 14 12 H -0.25 -8.59 7.11 99.48 0.71 -7.89 14 13 H -0.27 -10.18 7.11 99.48 0.71 -9.47 14 14 H -0.29 -13.01 7.11 99.48 0.71 -12.30 14 15 C 0.48 26.96 6.14 84.78 0.52 27.48 14 16 O -0.57 -36.62 14.36 -5.38 -0.08 -36.70 14 17 C -0.31 -14.82 6.34 22.45 0.14 -14.67 14 18 Cl -0.06 -2.52 26.94 -2.72 -0.07 -2.60 14 19 H 0.10 2.42 8.14 -2.39 -0.02 2.40 14 20 H 0.10 2.32 8.14 -2.39 -0.02 2.30 14 21 H 0.08 2.27 6.89 -2.38 -0.02 2.25 14 22 H 0.42 12.06 7.03 -92.71 -0.65 11.41 14 23 H 0.43 9.67 8.94 -92.71 -0.83 8.84 14 24 H 0.26 16.22 7.28 -92.71 -0.67 15.55 14 Total: -1.00 -72.37 229.99 3.34 -69.03 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.11 Total: 18.37 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 4.89 Total: 23.26 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -3.35 Total: -119.96 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.08 Total: -36.70 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.60 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.07 Total: -2.60 kcal Total: -72.37 3.34 -69.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524490.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.052 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds