Wall clock time and date at job start Mon Mar 30 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36117 * 125.39366 * 2 1 4 4 Cl 1.73605 * 125.17091 * 0.02562 * 3 2 1 5 5 C 1.34766 * 109.65217 * 180.02562 * 3 2 1 6 6 C 1.42011 * 107.71126 * 0.02562 * 5 3 2 7 7 C 1.40658 * 126.84253 * 180.02562 * 6 5 3 8 8 H 1.08004 * 119.99994 * 160.08788 * 7 6 5 9 9 C 1.40322 * 120.00123 * 340.08257 * 7 6 5 10 10 N 1.30616 * 120.00121 * 165.35112 * 9 7 6 11 11 Si 1.86801 * 119.99821 * 345.35354 * 9 7 6 12 12 H 1.48501 * 109.47192 * 90.52743 * 11 9 7 13 13 H 1.48500 * 109.46977 * 210.52707 * 11 9 7 14 14 H 1.48502 * 109.47135 * 330.52566 * 11 9 7 15 15 C 1.37156 * 125.39954 * 180.02562 * 2 1 3 16 16 C 1.41845 * 126.43828 * 359.69784 * 15 2 1 17 17 O 1.21682 * 119.99504 * 180.02562 * 16 15 2 18 18 O 1.35004 * 120.00287 * 0.02729 * 16 15 2 19 19 H 1.09005 * 109.46525 * 269.95211 * 1 2 3 20 20 H 1.08992 * 109.47465 * 29.95101 * 1 2 3 21 21 H 1.09000 * 109.46702 * 149.95696 * 1 2 3 22 22 H 1.07998 * 126.14644 * 180.02562 * 5 3 2 23 23 H 0.97007 * 119.99916 * 180.02562 * 10 9 7 24 24 H 0.96698 * 114.00533 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2534 1.1096 0.0000 4 17 1.6757 2.7467 0.0006 5 6 3.5505 0.7440 -0.0006 6 6 3.5993 -0.6753 -0.0016 7 6 4.7533 -1.4795 -0.0019 8 1 4.6934 -2.5100 0.3159 9 6 5.9823 -0.9430 -0.4152 10 7 7.0933 -1.5777 -0.1528 11 14 6.0293 0.6789 -1.3408 12 1 6.1619 1.7974 -0.3731 13 1 7.1894 0.6862 -2.2678 14 1 4.7741 0.8422 -2.1174 15 6 2.2595 -1.1180 -0.0005 16 6 1.8174 -2.4658 0.0049 17 8 2.6291 -3.3723 0.0043 18 8 0.4961 -2.7428 0.0108 19 1 -0.3632 -0.0009 1.0277 20 1 -0.3634 0.8903 -0.5130 21 1 -0.3633 -0.8896 -0.5145 22 1 4.4002 1.4106 -0.0003 23 1 7.9429 -1.2066 -0.4382 24 1 0.2923 -3.6880 0.0145 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556153.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:57 Heat of formation + Delta-G solvation = -80.062503 kcal Electronic energy + Delta-G solvation = -13887.499490 eV Core-core repulsion = 11212.523820 eV Total energy + Delta-G solvation = -2674.975669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.98834 -40.14910 -37.67121 -36.79116 -35.77760 -33.71506 -30.68225 -29.03803 -26.07544 -24.19179 -22.03962 -20.51144 -19.19160 -18.81709 -17.79274 -16.78216 -16.64432 -16.29982 -15.58523 -15.29118 -14.81097 -14.45252 -13.75709 -13.55073 -13.35201 -12.92438 -12.81678 -12.65933 -12.42112 -12.10592 -12.08130 -11.65345 -11.22848 -11.08542 -9.65506 -9.06306 -8.93497 -6.46819 0.34690 0.67150 1.27112 1.40645 1.51113 1.74027 2.15743 2.32250 2.34870 2.75198 3.23237 4.07495 4.46147 4.50335 4.61996 4.78830 4.91514 5.15791 5.32588 5.72353 5.76065 6.02351 6.31147 6.46294 6.63205 6.76089 7.41506 8.13142 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.014929 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.054361 B = 1875.112183 C = 3111.557016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.439 5.439 3 C 0.150 3.850 4 Cl -0.007 7.007 5 C -0.299 4.299 6 C 0.095 3.905 7 C -0.430 4.430 8 H 0.064 0.936 9 C 0.047 3.953 10 N -0.828 5.828 11 Si 0.970 3.030 12 H -0.243 1.243 13 H -0.275 1.275 14 H -0.246 1.246 15 C -0.203 4.203 16 C 0.536 3.464 17 O -0.579 6.579 18 O -0.512 6.512 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.140 0.860 23 H 0.301 0.699 24 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 8.211 -1.458 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.123 5.123 3 C 0.006 3.994 4 Cl 0.022 6.978 5 C -0.328 4.328 6 C 0.087 3.913 7 C -0.459 4.459 8 H 0.083 0.917 9 C -0.171 4.171 10 N -0.454 5.454 11 Si 0.792 3.208 12 H -0.168 1.168 13 H -0.201 1.201 14 H -0.169 1.169 15 C -0.305 4.305 16 C 0.392 3.608 17 O -0.477 6.477 18 O -0.325 6.325 19 H 0.096 0.904 20 H 0.114 0.886 21 H 0.116 0.884 22 H 0.158 0.842 23 H 0.112 0.888 24 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -10.724 8.354 -1.440 13.670 hybrid contribution 0.226 -0.394 -0.088 0.462 sum -10.498 7.960 -1.529 13.264 Atomic orbital electron populations 1.22250 0.75016 1.05323 1.04045 1.43339 1.06741 1.02500 1.59768 1.20756 0.89822 0.81614 1.07239 1.98328 1.89336 1.13023 1.97157 1.20617 0.94492 0.94678 1.23038 1.17591 0.90826 0.91530 0.91308 1.19204 0.91078 0.99066 1.36550 0.91742 1.27076 0.93659 1.02382 0.93981 1.69588 1.00145 1.40599 1.35029 0.85532 0.78954 0.77014 0.79349 1.16818 1.20130 1.16920 1.17928 0.89918 0.84100 1.38572 1.17957 0.80259 0.87873 0.74739 1.90870 1.55760 1.47868 1.53174 1.84976 1.25158 1.34631 1.87721 0.90413 0.88605 0.88358 0.84232 0.88834 0.72904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.06 10.30 127.77 1.32 3.37 14 2 N -0.44 -17.31 3.16 -525.91 -1.66 -18.97 14 3 C 0.15 5.87 7.34 83.23 0.61 6.48 14 4 Cl -0.01 -0.20 28.59 -2.72 -0.08 -0.28 14 5 C -0.30 -13.65 7.98 22.41 0.18 -13.48 14 6 C 0.10 5.06 5.51 -21.05 -0.12 4.94 14 7 C -0.43 -25.33 9.29 23.37 0.22 -25.12 14 8 H 0.06 4.31 6.60 -2.91 -0.02 4.29 14 9 C 0.05 2.54 5.52 85.38 0.47 3.01 14 10 N -0.83 -45.53 13.92 21.89 0.30 -45.23 14 11 Si 0.97 41.34 24.53 68.60 1.68 43.03 14 12 H -0.24 -9.45 6.67 99.48 0.66 -8.79 14 13 H -0.27 -10.92 7.11 99.48 0.71 -10.21 14 14 H -0.25 -10.59 6.56 99.48 0.65 -9.94 14 15 C -0.20 -9.81 6.80 39.91 0.27 -9.54 14 16 C 0.54 24.98 8.08 68.71 0.56 25.53 14 17 O -0.58 -31.75 15.62 19.24 0.30 -31.45 14 18 O -0.51 -17.11 10.81 -59.22 -0.64 -17.75 14 19 H 0.08 1.94 8.14 -2.38 -0.02 1.92 14 20 H 0.10 2.16 7.70 -2.39 -0.02 2.14 14 21 H 0.10 2.68 6.07 -2.39 -0.01 2.66 14 22 H 0.14 6.06 4.31 -2.91 -0.01 6.05 14 23 H 0.30 14.54 8.29 -92.70 -0.77 13.77 14 24 H 0.41 9.97 8.98 -74.06 -0.67 9.30 14 Total: -1.00 -68.17 227.86 3.92 -64.25 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.50 Total: 11.20 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 3.50 Total: -4.81 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -1.36 Total: -64.19 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.34 Total: -49.20 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.68 Total: 43.03 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -68.17 3.92 -64.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556153.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.813 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds