Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86795 * 119.99721 * 2 1 4 4 H 1.48503 * 109.47459 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47499 * 119.99804 * 3 2 1 6 6 H 1.48503 * 109.46812 * 239.99504 * 3 2 1 7 7 C 1.40057 * 120.00041 * 180.27052 * 2 1 3 8 8 H 1.07998 * 120.00201 * 3.09142 * 7 2 1 9 9 C 1.40460 * 120.00190 * 183.09027 * 7 2 1 10 10 N 1.33965 * 120.43295 * 6.85080 * 9 7 2 11 11 C 1.31383 * 122.02395 * 179.97438 * 10 9 7 12 12 C 1.38751 * 122.28088 * 359.96623 * 11 10 9 13 13 C 1.38566 * 119.86353 * 0.02885 * 12 11 10 14 14 C 1.41173 * 118.65103 * 359.73845 * 13 12 11 15 15 N 1.33693 * 107.32150 * 180.30731 * 14 13 12 16 16 C 1.32029 * 109.88307 * 0.20630 * 15 14 13 17 17 O 1.34882 * 143.15454 * 180.02562 * 16 15 14 18 18 C 1.35137 * 108.84434 * 179.97438 * 17 16 15 19 19 C 1.32752 * 108.81358 * 0.02562 * 18 17 16 20 20 N 1.36324 * 109.48248 * 359.57280 * 16 15 14 21 21 H 0.97001 * 119.99568 * 174.87792 * 1 2 3 22 22 H 1.08000 * 118.85381 * 179.97438 * 11 10 9 23 23 H 1.07997 * 120.06848 * 180.02562 * 12 11 10 24 24 H 1.07998 * 125.59512 * 180.02562 * 18 17 16 25 25 H 1.07997 * 126.15920 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 1.2767 2.7465 -0.0006 5 1 3.0954 1.6965 1.2125 6 1 3.0955 1.6963 -1.2125 7 6 2.0081 -1.2129 -0.0057 8 1 1.4693 -2.1473 -0.0606 9 6 3.4112 -1.2141 0.0598 10 7 4.0819 -0.0728 0.2654 11 6 5.3935 -0.0380 0.3327 12 6 6.1730 -1.1778 0.1966 13 6 5.5682 -2.4057 -0.0189 14 6 4.1593 -2.4632 -0.0891 15 7 3.8229 -3.7408 -0.2937 16 6 4.9101 -4.4876 -0.3526 17 8 5.3416 -5.7546 -0.5196 18 6 6.6915 -5.7677 -0.4579 19 6 7.1227 -4.5288 -0.2538 20 7 6.0116 -3.7003 -0.1939 21 1 -0.4849 -0.8367 -0.0750 22 1 5.8818 0.9107 0.4999 23 1 7.2490 -1.1080 0.2585 24 1 7.3169 -6.6424 -0.5582 25 1 8.1534 -4.2203 -0.1599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558463.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 79.979464 kcal Electronic energy + Delta-G solvation = -15025.927549 eV Core-core repulsion = 12392.617421 eV Total energy + Delta-G solvation = -2633.310128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.81827 -41.31468 -38.63937 -35.95759 -35.37567 -32.69093 -30.81913 -30.34731 -27.41745 -24.93886 -23.75722 -23.07217 -21.96967 -20.77322 -19.00258 -18.24094 -18.03027 -17.47156 -16.56508 -15.95461 -15.84345 -15.28548 -14.81911 -14.64403 -14.37615 -14.12253 -13.91923 -13.11687 -12.72779 -12.50299 -12.16135 -11.84162 -11.28149 -11.01691 -10.43341 -9.81149 -9.76318 -9.41462 -8.98533 -6.80588 0.10325 0.36586 0.92055 1.17689 1.58911 1.64856 1.67673 1.80722 2.11090 2.52301 2.59341 3.38325 3.43767 3.54510 3.88851 3.99936 4.06928 4.41072 4.59455 4.72750 4.89163 5.02964 5.19963 5.34334 5.50434 5.67721 5.85066 6.09274 6.33647 6.42775 6.84877 7.52146 7.75941 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.045808 B = 0.008872 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.102035 B = 3155.255654 C = 3747.405912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.016 3.984 3 Si 1.189 2.811 4 H -0.324 1.324 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.447 4.447 8 H 0.065 0.935 9 C 0.283 3.717 10 N -0.607 5.607 11 C 0.162 3.838 12 C -0.302 4.302 13 C 0.101 3.899 14 C -0.066 4.066 15 N -0.482 5.482 16 C 0.312 3.688 17 O -0.188 6.188 18 C 0.001 3.999 19 C -0.049 4.049 20 N -0.457 5.457 21 H 0.286 0.714 22 H 0.183 0.817 23 H 0.143 0.857 24 H 0.294 0.706 25 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.801 -5.927 -0.310 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.203 4.203 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.191 1.191 6 H -0.216 1.216 7 C -0.479 4.479 8 H 0.083 0.917 9 C 0.156 3.844 10 N -0.330 5.330 11 C 0.007 3.993 12 C -0.329 4.329 13 C -0.011 4.011 14 C -0.191 4.191 15 N -0.218 5.218 16 C 0.018 3.982 17 O -0.083 6.083 18 C -0.064 4.064 19 C -0.162 4.162 20 N -0.149 5.149 21 H 0.097 0.903 22 H 0.200 0.800 23 H 0.161 0.839 24 H 0.309 0.691 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 14.235 -4.173 -0.267 14.837 hybrid contribution 0.870 -2.795 -0.147 2.931 sum 15.105 -6.967 -0.413 16.640 Atomic orbital electron populations 1.70665 1.08454 1.33200 1.29251 1.29006 0.95465 1.08048 0.87827 0.81450 0.70106 0.66605 0.80028 1.25688 1.19136 1.21582 1.20788 0.91329 0.96406 1.39379 0.91680 1.19066 0.92984 0.83905 0.88430 1.66803 1.10855 1.24524 1.30858 1.22533 0.88262 0.98151 0.90378 1.20169 1.00597 0.88561 1.23552 1.18394 0.93385 0.84282 1.05085 1.20832 0.91643 0.91159 1.15428 1.69393 1.23868 1.02125 1.26392 1.22356 0.85366 0.82443 1.08028 1.84571 1.24359 1.19805 1.79602 1.25319 0.77879 1.00423 1.02731 1.23107 0.94041 0.88084 1.10924 1.43972 1.08957 1.07009 1.54953 0.90323 0.79981 0.83929 0.69063 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.68 13.65 21.85 0.30 -43.38 15 2 C 0.02 0.90 5.52 85.29 0.47 1.37 15 3 Si 1.19 55.48 25.59 68.60 1.76 57.24 15 4 H -0.32 -14.62 7.11 99.48 0.71 -13.91 15 5 H -0.26 -11.91 6.66 99.48 0.66 -11.24 15 6 H -0.29 -13.28 7.11 99.48 0.71 -12.58 15 7 C -0.45 -26.07 9.61 23.25 0.22 -25.85 15 8 H 0.06 4.03 8.05 -2.91 -0.02 4.01 15 9 C 0.28 15.71 6.55 41.48 0.27 15.98 15 10 N -0.61 -30.16 4.60 -184.81 -0.85 -31.01 15 11 C 0.16 6.61 11.11 84.88 0.94 7.55 15 12 C -0.30 -11.85 10.09 22.47 0.23 -11.62 15 13 C 0.10 4.56 7.38 38.98 0.29 4.85 15 14 C -0.07 -3.57 7.23 41.70 0.30 -3.27 15 15 N -0.48 -25.71 11.25 -300.87 -3.39 -29.10 15 16 C 0.31 13.68 9.71 179.40 1.74 15.43 15 17 O -0.19 -6.17 10.75 -16.66 -0.18 -6.35 15 18 C 0.00 0.02 12.01 66.64 0.80 0.82 15 19 C -0.05 -1.13 11.96 82.42 0.99 -0.14 15 20 N -0.46 -17.64 3.60 -461.92 -1.66 -19.30 15 21 H 0.29 15.35 8.72 -92.71 -0.81 14.54 15 22 H 0.18 5.59 8.06 -2.91 -0.02 5.57 15 23 H 0.14 4.39 8.06 -2.91 -0.02 4.37 15 24 H 0.29 1.04 8.06 -2.91 -0.02 1.02 15 25 H 0.23 3.00 8.06 -2.91 -0.02 2.97 15 Total: -1.00 -75.42 230.49 3.38 -72.04 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: 1.15 Total: -5.26 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.25 Total: 5.13 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.60 Total: -122.79 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.18 Total: -6.35 kcal Atomic # 14 Polarization: 55.48 SS G_CDS: 1.76 Total: 57.24 kcal Total: -75.42 3.38 -72.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558463.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.015 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds