Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99993 * 2 1 4 4 C 1.53000 * 109.47010 * 184.85214 * 3 2 1 5 5 H 1.09000 * 109.46910 * 176.27410 * 4 3 2 6 6 C 1.50700 * 109.47108 * 56.27945 * 4 3 2 7 7 H 1.08001 * 119.99688 * 268.79234 * 6 4 3 8 8 C 1.37879 * 120.00182 * 88.78928 * 6 4 3 9 9 N 1.31511 * 119.99764 * 186.83482 * 8 6 4 10 10 Si 1.86791 * 120.00179 * 6.83564 * 8 6 4 11 11 H 1.48502 * 109.47235 * 84.94778 * 10 8 6 12 12 H 1.48497 * 109.47423 * 204.95057 * 10 8 6 13 13 H 1.48505 * 109.47240 * 324.94792 * 10 8 6 14 14 N 1.46901 * 109.47398 * 296.27637 * 4 3 2 15 15 C 1.46954 * 110.99957 * 180.02562 * 14 4 3 16 16 C 1.53046 * 109.36483 * 183.18770 * 15 14 4 17 17 N 1.46957 * 109.36512 * 301.59843 * 16 15 14 18 18 C 1.46901 * 111.00055 * 183.18731 * 17 16 15 19 19 C 1.46954 * 110.87961 * 59.32022 * 17 16 15 20 20 C 1.46954 * 110.99587 * 303.79673 * 14 4 3 21 21 H 1.09007 * 109.47274 * 64.85323 * 1 2 3 22 22 H 1.08993 * 109.47428 * 184.85587 * 1 2 3 23 23 H 1.09002 * 109.47269 * 304.85991 * 1 2 3 24 24 H 1.09004 * 109.47330 * 64.85465 * 3 2 1 25 25 H 1.08998 * 109.47166 * 304.85500 * 3 2 1 26 26 H 0.97005 * 119.99973 * 179.97438 * 9 8 6 27 27 H 1.09001 * 109.49093 * 63.22008 * 15 14 4 28 28 H 1.09007 * 109.50560 * 303.16573 * 15 14 4 29 29 H 1.09000 * 109.48998 * 181.62778 * 16 15 14 30 30 H 1.09000 * 109.48838 * 61.56524 * 16 15 14 31 31 H 1.09000 * 109.46928 * 59.99602 * 18 17 16 32 32 H 1.08997 * 109.47290 * 300.00049 * 18 17 16 33 33 H 1.09000 * 109.46925 * 179.97438 * 18 17 16 34 34 H 1.08992 * 109.49260 * 60.64788 * 19 17 16 35 35 H 1.08999 * 109.49023 * 180.71414 * 19 17 16 36 36 H 1.09000 * 109.49307 * 296.77936 * 20 14 4 37 37 H 1.08999 * 109.49091 * 56.82545 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1220 5 1 3.9687 2.1826 -0.1886 6 6 3.8754 0.4025 -1.3618 7 1 3.9960 -0.6694 -1.3067 8 6 4.0369 1.0533 -2.5666 9 7 4.2042 0.3597 -3.6713 10 14 4.0180 2.9200 -2.6297 11 1 5.3762 3.4393 -2.3282 12 1 3.6074 3.3655 -3.9854 13 1 3.0553 3.4396 -1.6253 14 7 4.0642 0.4951 1.0591 15 6 5.5255 0.3632 0.9767 16 6 6.0323 -0.4303 2.1833 17 7 5.6375 0.2584 3.4200 18 6 6.1710 -0.4332 4.6011 19 6 4.1762 0.3903 3.5024 20 6 3.6699 1.1842 2.2957 21 1 -0.3634 0.4367 -0.9303 22 1 -0.3634 -1.0239 0.0870 23 1 -0.3634 0.5874 0.8433 24 1 1.7591 1.8150 0.9303 25 1 1.6214 1.8763 -0.8433 26 1 4.3174 0.8175 -4.5190 27 1 5.9806 1.3536 0.9756 28 1 5.7925 -0.1607 0.0588 29 1 7.1188 -0.5046 2.1394 30 1 5.5983 -1.4301 2.1694 31 1 7.2594 -0.4579 4.5469 32 1 5.7856 -1.4524 4.6303 33 1 5.8643 0.0976 5.5024 34 1 3.7211 -0.6000 3.5035 35 1 3.9095 0.9144 4.4202 36 1 4.1043 2.1838 2.3093 37 1 2.5834 1.2592 2.3396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = -21.534162 kcal Electronic energy + Delta-G solvation = -17132.187098 eV Core-core repulsion = 14524.258189 eV Total energy + Delta-G solvation = -2607.928909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83617 -36.98073 -34.94042 -32.43357 -30.45191 -29.93506 -26.89786 -25.93250 -24.60832 -23.21251 -22.55400 -20.11151 -18.99898 -17.00075 -16.01134 -15.22723 -14.92611 -14.69751 -14.48154 -14.38214 -14.11459 -13.68750 -13.40317 -13.02777 -12.36571 -12.19058 -11.99283 -11.66889 -11.52213 -11.17527 -10.91576 -10.75239 -10.68663 -10.42136 -10.19613 -9.90152 -9.74648 -9.16366 -8.61112 -8.53543 -8.08072 -7.24613 -6.05134 -4.01177 3.23995 3.31536 3.33958 4.24683 4.39074 4.69378 4.84587 5.24354 5.30213 5.36641 5.58383 5.61159 5.75559 5.81701 5.89200 5.92430 5.93233 5.96022 6.02008 6.11432 6.18041 6.26414 6.34947 6.43799 6.54018 6.57956 6.81189 6.93717 7.29726 7.34467 7.56245 7.99241 8.12738 8.16514 8.71780 9.11077 9.57564 11.08189 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.009911 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.281978 B = 2824.482879 C = 3438.685764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.074 3.926 4 C 0.187 3.813 5 H 0.014 0.986 6 C -0.483 4.483 7 H 0.085 0.915 8 C 0.070 3.930 9 N -0.895 5.895 10 Si 0.864 3.136 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.270 1.270 14 N -0.518 5.518 15 C 0.068 3.932 16 C 0.058 3.942 17 N -0.548 5.548 18 C 0.027 3.973 19 C 0.062 3.938 20 C 0.049 3.951 21 H 0.031 0.969 22 H 0.074 0.926 23 H 0.024 0.976 24 H 0.018 0.982 25 H 0.038 0.962 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 1.461 12.387 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C -0.003 4.003 4 C 0.080 3.920 5 H 0.031 0.969 6 C -0.522 4.522 7 H 0.103 0.897 8 C -0.131 4.131 9 N -0.533 5.533 10 Si 0.692 3.308 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.195 1.195 14 N -0.243 5.243 15 C -0.060 4.060 16 C -0.070 4.070 17 N -0.273 5.273 18 C -0.122 4.122 19 C -0.066 4.066 20 C -0.079 4.079 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.902 1.305 12.166 12.269 hybrid contribution -0.319 1.365 -0.158 1.411 sum -1.221 2.670 12.007 12.361 Atomic orbital electron populations 1.22627 0.84260 1.01318 0.98584 1.88126 1.16343 1.27415 1.94786 1.22916 0.96640 0.84200 0.96563 1.19739 0.89092 0.93065 0.90146 0.96910 1.20732 1.46085 0.96183 0.89168 0.89693 1.24966 0.95162 0.97302 0.95715 1.69889 1.49894 1.35234 0.98307 0.87098 0.78888 0.87529 0.77310 1.20120 1.21289 1.19483 1.62124 1.10084 1.51012 1.01108 1.22003 0.88017 0.98508 0.97495 1.22249 0.99363 0.96217 0.89196 1.62198 1.11509 1.51073 1.02485 1.22310 1.00199 0.96342 0.93322 1.22121 0.87079 0.99513 0.97917 1.22201 0.99852 0.95192 0.90700 0.95079 0.90695 0.95731 0.96366 0.94421 0.92701 0.95602 0.88451 0.91122 0.94166 0.91752 0.95927 0.91956 0.94194 0.91440 0.95473 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.88 10.15 -35.23 -0.36 -8.24 16 3 C 0.07 1.65 5.08 37.16 0.19 1.84 16 4 C 0.19 4.46 1.42 -68.86 -0.10 4.36 16 5 H 0.01 0.33 5.59 -51.93 -0.29 0.04 16 6 C -0.48 -13.44 7.16 -34.44 -0.25 -13.68 16 7 H 0.09 2.66 8.04 -52.49 -0.42 2.23 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 10 Si 0.86 21.18 26.51 -169.99 -4.51 16.67 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.30 6.36 56.52 0.36 -5.94 16 14 N -0.52 -11.15 4.50 -227.87 -1.03 -12.18 16 15 C 0.07 1.38 5.39 -3.77 -0.02 1.36 16 16 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 17 N -0.55 -8.59 4.97 -242.76 -1.21 -9.80 16 18 C 0.03 0.33 9.60 60.07 0.58 0.91 16 19 C 0.06 0.97 5.62 -3.76 -0.02 0.95 16 20 C 0.05 0.90 5.23 -3.76 -0.02 0.88 16 21 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.36 6.07 -51.93 -0.32 0.05 16 25 H 0.04 0.85 7.21 -51.93 -0.37 0.48 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 2.18 6.97 -51.92 -0.36 1.81 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -30.52 288.11 -6.95 -37.47 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.32 Total: -3.06 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 1.35 Total: 1.08 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -1.46 Total: -48.27 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.36 Total: -8.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.51 Total: 16.67 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.52 -6.95 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.936 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds