Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99993 * 2 1 4 4 C 1.53000 * 109.47010 * 184.85214 * 3 2 1 5 5 H 1.09000 * 109.46910 * 176.27410 * 4 3 2 6 6 C 1.50700 * 109.47108 * 56.27945 * 4 3 2 7 7 H 1.08001 * 119.99688 * 268.79234 * 6 4 3 8 8 C 1.37879 * 120.00182 * 88.78928 * 6 4 3 9 9 N 1.31511 * 119.99764 * 186.83482 * 8 6 4 10 10 Si 1.86791 * 120.00179 * 6.83564 * 8 6 4 11 11 H 1.48502 * 109.47235 * 84.94778 * 10 8 6 12 12 H 1.48497 * 109.47423 * 204.95057 * 10 8 6 13 13 H 1.48505 * 109.47240 * 324.94792 * 10 8 6 14 14 N 1.46901 * 109.47398 * 296.27637 * 4 3 2 15 15 C 1.46954 * 110.99957 * 180.02562 * 14 4 3 16 16 C 1.53046 * 109.36483 * 183.18770 * 15 14 4 17 17 N 1.46957 * 109.36512 * 301.59843 * 16 15 14 18 18 C 1.46901 * 111.00055 * 183.18731 * 17 16 15 19 19 C 1.46954 * 110.87961 * 59.32022 * 17 16 15 20 20 C 1.46954 * 110.99587 * 303.79673 * 14 4 3 21 21 H 1.09007 * 109.47274 * 64.85323 * 1 2 3 22 22 H 1.08993 * 109.47428 * 184.85587 * 1 2 3 23 23 H 1.09002 * 109.47269 * 304.85991 * 1 2 3 24 24 H 1.09004 * 109.47330 * 64.85465 * 3 2 1 25 25 H 1.08998 * 109.47166 * 304.85500 * 3 2 1 26 26 H 0.97005 * 119.99973 * 179.97438 * 9 8 6 27 27 H 1.09001 * 109.49093 * 63.22008 * 15 14 4 28 28 H 1.09007 * 109.50560 * 303.16573 * 15 14 4 29 29 H 1.09000 * 109.48998 * 181.62778 * 16 15 14 30 30 H 1.09000 * 109.48838 * 61.56524 * 16 15 14 31 31 H 1.09000 * 109.46928 * 59.99602 * 18 17 16 32 32 H 1.08997 * 109.47290 * 300.00049 * 18 17 16 33 33 H 1.09000 * 109.46925 * 179.97438 * 18 17 16 34 34 H 1.08992 * 109.49260 * 60.64788 * 19 17 16 35 35 H 1.08999 * 109.49023 * 180.71414 * 19 17 16 36 36 H 1.09000 * 109.49307 * 296.77936 * 20 14 4 37 37 H 1.08999 * 109.49091 * 56.82545 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1220 5 1 3.9687 2.1826 -0.1886 6 6 3.8754 0.4025 -1.3618 7 1 3.9960 -0.6694 -1.3067 8 6 4.0369 1.0533 -2.5666 9 7 4.2042 0.3597 -3.6713 10 14 4.0180 2.9200 -2.6297 11 1 5.3762 3.4393 -2.3282 12 1 3.6074 3.3655 -3.9854 13 1 3.0553 3.4396 -1.6253 14 7 4.0642 0.4951 1.0591 15 6 5.5255 0.3632 0.9767 16 6 6.0323 -0.4303 2.1833 17 7 5.6375 0.2584 3.4200 18 6 6.1710 -0.4332 4.6011 19 6 4.1762 0.3903 3.5024 20 6 3.6699 1.1842 2.2957 21 1 -0.3634 0.4367 -0.9303 22 1 -0.3634 -1.0239 0.0870 23 1 -0.3634 0.5874 0.8433 24 1 1.7591 1.8150 0.9303 25 1 1.6214 1.8763 -0.8433 26 1 4.3174 0.8175 -4.5190 27 1 5.9806 1.3536 0.9756 28 1 5.7925 -0.1607 0.0588 29 1 7.1188 -0.5046 2.1394 30 1 5.5983 -1.4301 2.1694 31 1 7.2594 -0.4579 4.5469 32 1 5.7856 -1.4524 4.6303 33 1 5.8643 0.0976 5.5024 34 1 3.7211 -0.6000 3.5035 35 1 3.9095 0.9144 4.4202 36 1 4.1043 2.1838 2.3093 37 1 2.5834 1.2592 2.3396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -46.152987 kcal Electronic energy + Delta-G solvation = -17133.254650 eV Core-core repulsion = 14524.258189 eV Total energy + Delta-G solvation = -2608.996461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33397 -38.54910 -36.49759 -34.48272 -31.90318 -31.61160 -28.23174 -27.63441 -26.29180 -24.56869 -24.06213 -21.82391 -20.54089 -19.05455 -17.63516 -16.90419 -16.47714 -16.16181 -15.96298 -15.86345 -15.53441 -15.25997 -15.03158 -14.64124 -14.22284 -13.67718 -13.31596 -12.97875 -12.93857 -12.84604 -12.59798 -12.20827 -12.19464 -12.02829 -11.89163 -11.79468 -11.36740 -11.09586 -10.70018 -10.26338 -9.30901 -8.92166 -8.24857 -6.25158 1.29985 1.31674 1.40247 2.32250 3.00468 3.06783 3.14650 3.29761 4.03417 4.14539 4.22302 4.33317 4.42740 4.45743 4.48311 4.55940 4.64283 4.68153 4.72173 4.73840 4.80418 4.86982 4.89776 4.91490 5.02949 5.03970 5.17429 5.24528 5.55487 6.03805 6.07234 6.20508 6.38954 6.55909 6.77880 6.83070 7.37320 8.92594 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.009911 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.281978 B = 2824.482879 C = 3438.685764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.078 3.922 4 C 0.187 3.813 5 H 0.011 0.989 6 C -0.476 4.476 7 H 0.032 0.968 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.928 3.072 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.247 1.247 14 N -0.533 5.533 15 C 0.070 3.930 16 C 0.068 3.932 17 N -0.556 5.556 18 C 0.027 3.973 19 C 0.067 3.933 20 C 0.049 3.951 21 H 0.031 0.969 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 3.074 14.988 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.000 4.000 4 C 0.079 3.921 5 H 0.028 0.972 6 C -0.515 4.515 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.752 3.248 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.170 1.170 14 N -0.258 5.258 15 C -0.058 4.058 16 C -0.060 4.060 17 N -0.281 5.281 18 C -0.120 4.120 19 C -0.061 4.061 20 C -0.079 4.079 21 H 0.050 0.950 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.047 0.953 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.460 2.916 14.809 15.164 hybrid contribution -0.165 0.742 -0.910 1.186 sum -1.626 3.658 13.899 14.464 Atomic orbital electron populations 1.22860 0.81500 1.03078 0.99845 1.88065 1.19479 1.27796 1.95080 1.22775 0.94977 0.84418 0.97809 1.19625 0.90828 0.92164 0.89474 0.97161 1.20764 1.45286 0.94065 0.91356 0.94980 1.25768 0.95011 1.02570 0.95116 1.70050 1.52049 1.37494 0.99071 0.86048 0.79677 0.81131 0.77895 1.19382 1.21039 1.17044 1.62037 1.10545 1.51552 1.01715 1.21909 0.87772 0.98267 0.97858 1.22083 1.00262 0.94912 0.88734 1.62206 1.11544 1.51463 1.02869 1.22394 1.00869 0.96377 0.92386 1.22118 0.87082 0.99030 0.97904 1.22298 1.00409 0.95347 0.89867 0.95022 0.89107 0.92835 0.93078 0.95292 0.92674 0.96069 0.92028 0.89214 0.95263 0.90578 0.95748 0.89910 0.95044 0.88238 0.95332 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -17.16 10.15 -148.98 -1.51 -18.68 16 3 C 0.08 3.33 5.08 71.98 0.37 3.69 16 4 C 0.19 8.91 1.42 44.17 0.06 8.97 16 5 H 0.01 0.52 5.59 -2.39 -0.01 0.51 16 6 C -0.48 -27.51 7.16 25.60 0.18 -27.33 16 7 H 0.03 2.14 8.04 -2.91 -0.02 2.12 16 8 C 0.01 0.72 5.47 84.66 0.46 1.18 16 9 N -0.95 -59.53 13.96 21.45 0.30 -59.24 16 10 Si 0.93 43.90 26.51 68.60 1.82 45.72 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.25 -10.67 6.36 99.48 0.63 -10.03 16 14 N -0.53 -22.83 4.50 -874.86 -3.94 -26.77 16 15 C 0.07 2.90 5.39 86.31 0.46 3.36 16 16 C 0.07 2.24 5.62 86.31 0.49 2.73 16 17 N -0.56 -15.92 4.97 -921.95 -4.58 -20.50 16 18 C 0.03 0.58 9.60 127.69 1.23 1.80 16 19 C 0.07 1.90 5.62 86.31 0.49 2.38 16 20 C 0.05 1.67 5.23 86.31 0.45 2.12 16 21 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.85 6.07 -2.38 -0.01 1.84 16 25 H 0.03 1.27 7.21 -2.39 -0.02 1.25 16 26 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.06 2.92 6.97 -2.38 -0.02 2.90 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 2.23 8.13 -2.39 -0.02 2.21 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 2.63 5.98 -2.39 -0.01 2.62 16 Total: -1.00 -68.34 288.11 -1.53 -69.87 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.94 Total: 8.67 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.44 Total: 0.93 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -8.22 Total: -106.51 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.51 Total: -18.68 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.82 Total: 45.72 kcal Total: -68.34 -1.53 -69.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.713 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds