Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00134 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47136 * 184.00077 * 4 3 2 6 6 C 1.50705 * 109.47143 * 303.99325 * 4 3 2 7 7 H 1.08000 * 120.00109 * 119.99777 * 6 4 3 8 8 C 1.37875 * 119.99942 * 300.00822 * 6 4 3 9 9 N 1.31512 * 119.99852 * 179.97438 * 8 6 4 10 10 Si 1.86797 * 120.00065 * 359.97438 * 8 6 4 11 11 H 1.48506 * 109.47088 * 90.00454 * 10 8 6 12 12 H 1.48507 * 109.47108 * 210.00290 * 10 8 6 13 13 H 1.48495 * 109.47288 * 330.00058 * 10 8 6 14 14 N 1.46894 * 109.47711 * 63.99529 * 4 3 2 15 15 C 1.46955 * 111.00509 * 182.81340 * 14 4 3 16 16 C 1.53045 * 109.36509 * 176.81272 * 15 14 4 17 17 N 1.46953 * 109.36748 * 58.40434 * 16 15 14 18 18 C 1.46902 * 111.00075 * 176.81300 * 17 16 15 19 19 C 1.46961 * 110.87907 * 300.67794 * 17 16 15 20 20 C 1.46962 * 110.99716 * 59.01225 * 14 4 3 21 21 H 1.08997 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47138 * 300.00208 * 1 2 3 23 23 H 1.09008 * 109.46908 * 59.99877 * 1 2 3 24 24 H 1.09001 * 109.47164 * 299.99929 * 3 2 1 25 25 H 1.08996 * 109.46964 * 60.00145 * 3 2 1 26 26 H 0.97003 * 120.00365 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.48467 * 296.78146 * 15 14 4 28 28 H 1.09005 * 109.48486 * 56.84327 * 15 14 4 29 29 H 1.09008 * 109.49253 * 298.43172 * 16 15 14 30 30 H 1.08998 * 109.50553 * 178.38044 * 16 15 14 31 31 H 1.09006 * 109.46618 * 183.79805 * 18 17 16 32 32 H 1.08994 * 109.46882 * 303.79505 * 18 17 16 33 33 H 1.09001 * 109.47266 * 63.80062 * 18 17 16 34 34 H 1.09000 * 109.48875 * 299.35510 * 19 17 16 35 35 H 1.09000 * 109.50890 * 179.29784 * 19 17 16 36 36 H 1.08995 * 109.48830 * 303.15543 * 20 14 4 37 37 H 1.09000 * 109.48789 * 63.22647 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9787 2.1778 0.0711 6 6 3.9740 0.3527 1.1771 7 1 4.5242 -0.5626 1.0167 8 6 3.6726 0.7603 2.4593 9 7 4.0548 0.0341 3.4869 10 14 2.7213 2.3437 2.7367 11 1 1.2656 2.0502 2.7540 12 1 3.1214 2.9404 4.0364 13 1 3.0205 3.2995 1.6403 14 7 3.9753 0.5408 -1.2456 15 6 5.4320 0.3472 -1.2524 16 6 5.8392 -0.3957 -2.5271 17 7 5.4082 0.3771 -3.7003 18 6 5.8479 -0.2667 -4.9453 19 6 3.9514 0.5708 -3.6936 20 6 3.5441 1.3136 -2.4189 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6887 1.8464 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 3.8424 0.3205 4.3891 27 1 5.9279 1.3174 -1.2227 28 1 5.7250 -0.2383 -0.3809 29 1 5.3647 -1.3769 -2.5435 30 1 6.9224 -0.5152 -2.5483 31 1 5.5746 0.3598 -5.7945 32 1 6.9297 -0.3981 -4.9240 33 1 5.3655 -1.2394 -5.0414 34 1 3.4554 -0.3994 -3.7232 35 1 3.6580 1.1560 -4.5650 36 1 2.4609 1.4327 -2.3978 37 1 4.0186 2.2948 -2.4025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -12.247311 kcal Electronic energy + Delta-G solvation = -17199.622652 eV Core-core repulsion = 14592.096452 eV Total energy + Delta-G solvation = -2607.526201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88273 -37.06938 -34.96246 -32.45463 -30.49502 -29.98786 -26.98097 -25.89564 -24.63137 -23.27271 -22.56866 -20.25751 -19.06257 -16.98348 -16.03573 -15.34534 -15.14707 -14.71069 -14.43842 -14.35821 -14.11176 -13.69597 -13.46653 -13.08237 -12.46610 -12.19228 -11.99113 -11.72112 -11.52812 -11.27437 -10.87011 -10.76622 -10.66267 -10.41730 -10.31727 -9.93260 -9.71378 -9.05647 -8.60566 -8.48483 -8.10196 -7.28864 -6.03298 -3.99223 3.22793 3.29253 3.34524 4.22388 4.38995 4.66225 4.80076 5.26631 5.28652 5.33760 5.56509 5.58431 5.72343 5.79996 5.86548 5.87815 5.90763 5.93387 5.97330 6.08226 6.15998 6.17805 6.23457 6.38921 6.44753 6.58696 6.83177 6.91296 7.27681 7.31273 7.51958 7.92966 8.09172 8.14644 8.69694 9.04129 9.57982 11.10218 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.009253 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.446826 B = 3025.284236 C = 3489.808133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.066 3.934 4 C 0.187 3.813 5 H 0.013 0.987 6 C -0.486 4.486 7 H 0.085 0.915 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.270 1.270 14 N -0.515 5.515 15 C 0.066 3.934 16 C 0.057 3.943 17 N -0.547 5.547 18 C 0.027 3.973 19 C 0.062 3.938 20 C 0.050 3.950 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 2.035 -12.490 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.260 6.260 3 C -0.012 4.012 4 C 0.079 3.921 5 H 0.031 0.969 6 C -0.524 4.524 7 H 0.103 0.897 8 C -0.128 4.128 9 N -0.536 5.536 10 Si 0.705 3.295 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.196 1.196 14 N -0.240 5.240 15 C -0.062 4.062 16 C -0.071 4.071 17 N -0.272 5.272 18 C -0.122 4.122 19 C -0.066 4.066 20 C -0.079 4.079 21 H 0.096 0.904 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.479 1.847 -12.278 12.504 hybrid contribution -0.978 1.142 0.286 1.531 sum -2.457 2.989 -11.991 12.600 Atomic orbital electron populations 1.22660 0.84339 1.01631 0.98440 1.88177 1.16213 1.26885 1.94697 1.23018 0.97076 0.84509 0.96553 1.19757 0.88951 0.94221 0.89141 0.96944 1.20774 1.35159 1.08855 0.87618 0.89696 1.24842 0.95512 0.96306 0.96118 1.69853 1.47076 1.38199 0.98495 0.87082 0.80418 0.84827 0.77209 1.20687 1.22015 1.19571 1.62004 1.12044 1.48516 1.01483 1.22063 0.88206 0.99169 0.96742 1.22256 0.99353 0.95479 0.89989 1.62196 1.13347 1.49211 1.02463 1.22313 1.00564 0.96944 0.92361 1.22117 0.87261 0.99569 0.97680 1.22186 0.99935 0.94962 0.90807 0.90414 0.95305 0.95569 0.95826 0.95170 0.92700 0.95288 0.88494 0.94184 0.91055 0.91917 0.91723 0.95929 0.94180 0.91361 0.90889 0.95252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.95 10.14 -35.23 -0.36 -8.31 16 3 C 0.07 1.48 4.74 37.16 0.18 1.66 16 4 C 0.19 4.51 1.45 -68.86 -0.10 4.41 16 5 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 6 C -0.49 -13.64 8.02 -34.44 -0.28 -13.92 16 7 H 0.09 2.60 6.73 -52.49 -0.35 2.25 16 8 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 9 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 10 Si 0.87 21.84 24.33 -169.99 -4.14 17.70 16 11 H -0.28 -6.87 6.90 56.52 0.39 -6.48 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 14 N -0.52 -11.06 4.50 -227.88 -1.03 -12.09 16 15 C 0.07 1.33 5.34 -3.77 -0.02 1.31 16 16 C 0.06 0.95 5.62 -3.77 -0.02 0.93 16 17 N -0.55 -8.46 4.97 -242.75 -1.21 -9.67 16 18 C 0.03 0.32 9.60 60.07 0.58 0.90 16 19 C 0.06 0.96 5.62 -3.76 -0.02 0.94 16 20 C 0.05 0.90 5.30 -3.76 -0.02 0.88 16 21 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.02 0.47 6.11 -51.93 -0.32 0.16 16 25 H 0.03 0.72 3.38 -51.93 -0.18 0.54 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 2.13 6.20 -51.93 -0.32 1.81 16 29 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.28 6.03 -51.93 -0.31 0.96 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -30.91 282.23 -6.49 -37.41 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -6.11 Total: -3.36 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 1.31 Total: 0.74 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.46 Total: -48.43 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.36 Total: -8.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.91 -6.49 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.159 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds