Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00134 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47136 * 184.00077 * 4 3 2 6 6 C 1.50705 * 109.47143 * 303.99325 * 4 3 2 7 7 H 1.08000 * 120.00109 * 119.99777 * 6 4 3 8 8 C 1.37875 * 119.99942 * 300.00822 * 6 4 3 9 9 N 1.31512 * 119.99852 * 179.97438 * 8 6 4 10 10 Si 1.86797 * 120.00065 * 359.97438 * 8 6 4 11 11 H 1.48506 * 109.47088 * 90.00454 * 10 8 6 12 12 H 1.48507 * 109.47108 * 210.00290 * 10 8 6 13 13 H 1.48495 * 109.47288 * 330.00058 * 10 8 6 14 14 N 1.46894 * 109.47711 * 63.99529 * 4 3 2 15 15 C 1.46955 * 111.00509 * 182.81340 * 14 4 3 16 16 C 1.53045 * 109.36509 * 176.81272 * 15 14 4 17 17 N 1.46953 * 109.36748 * 58.40434 * 16 15 14 18 18 C 1.46902 * 111.00075 * 176.81300 * 17 16 15 19 19 C 1.46961 * 110.87907 * 300.67794 * 17 16 15 20 20 C 1.46962 * 110.99716 * 59.01225 * 14 4 3 21 21 H 1.08997 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47138 * 300.00208 * 1 2 3 23 23 H 1.09008 * 109.46908 * 59.99877 * 1 2 3 24 24 H 1.09001 * 109.47164 * 299.99929 * 3 2 1 25 25 H 1.08996 * 109.46964 * 60.00145 * 3 2 1 26 26 H 0.97003 * 120.00365 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.48467 * 296.78146 * 15 14 4 28 28 H 1.09005 * 109.48486 * 56.84327 * 15 14 4 29 29 H 1.09008 * 109.49253 * 298.43172 * 16 15 14 30 30 H 1.08998 * 109.50553 * 178.38044 * 16 15 14 31 31 H 1.09006 * 109.46618 * 183.79805 * 18 17 16 32 32 H 1.08994 * 109.46882 * 303.79505 * 18 17 16 33 33 H 1.09001 * 109.47266 * 63.80062 * 18 17 16 34 34 H 1.09000 * 109.48875 * 299.35510 * 19 17 16 35 35 H 1.09000 * 109.50890 * 179.29784 * 19 17 16 36 36 H 1.08995 * 109.48830 * 303.15543 * 20 14 4 37 37 H 1.09000 * 109.48789 * 63.22647 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9787 2.1778 0.0711 6 6 3.9740 0.3527 1.1771 7 1 4.5242 -0.5626 1.0167 8 6 3.6726 0.7603 2.4593 9 7 4.0548 0.0341 3.4869 10 14 2.7213 2.3437 2.7367 11 1 1.2656 2.0502 2.7540 12 1 3.1214 2.9404 4.0364 13 1 3.0205 3.2995 1.6403 14 7 3.9753 0.5408 -1.2456 15 6 5.4320 0.3472 -1.2524 16 6 5.8392 -0.3957 -2.5271 17 7 5.4082 0.3771 -3.7003 18 6 5.8479 -0.2667 -4.9453 19 6 3.9514 0.5708 -3.6936 20 6 3.5441 1.3136 -2.4189 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6887 1.8464 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 3.8424 0.3205 4.3891 27 1 5.9279 1.3174 -1.2227 28 1 5.7250 -0.2383 -0.3809 29 1 5.3647 -1.3769 -2.5435 30 1 6.9224 -0.5152 -2.5483 31 1 5.5746 0.3598 -5.7945 32 1 6.9297 -0.3981 -4.9240 33 1 5.3655 -1.2394 -5.0414 34 1 3.4554 -0.3994 -3.7232 35 1 3.6580 1.1560 -4.5650 36 1 2.4609 1.4327 -2.3978 37 1 4.0186 2.2948 -2.4025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -37.766987 kcal Electronic energy + Delta-G solvation = -17200.729269 eV Core-core repulsion = 14592.096452 eV Total energy + Delta-G solvation = -2608.632817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38195 -38.65278 -36.51640 -34.50765 -31.93771 -31.68554 -28.31188 -27.59110 -26.34942 -24.61744 -24.08130 -21.99657 -20.56799 -18.98792 -17.77690 -17.03623 -16.66050 -16.04476 -16.01056 -15.89024 -15.54583 -15.28583 -15.08697 -14.68751 -14.28063 -13.70326 -13.32189 -13.06681 -12.95689 -12.89252 -12.51681 -12.32286 -12.21981 -12.07768 -11.92233 -11.73485 -11.34421 -11.07127 -10.68134 -10.25007 -9.31469 -8.95955 -8.25215 -6.25375 1.23714 1.28865 1.37697 2.29692 3.00693 3.04771 3.12923 3.21809 4.01512 4.09906 4.19909 4.27913 4.32335 4.38743 4.45977 4.50794 4.59102 4.65670 4.67767 4.71439 4.77286 4.83988 4.88751 4.91669 5.01477 5.04030 5.17446 5.20024 5.51259 5.98931 6.05634 6.18122 6.35548 6.51081 6.74271 6.78528 7.35792 8.91979 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.009253 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.446826 B = 3025.284236 C = 3489.808133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.379 6.379 3 C 0.069 3.931 4 C 0.187 3.813 5 H 0.007 0.993 6 C -0.483 4.483 7 H 0.041 0.959 8 C 0.015 3.985 9 N -0.947 5.947 10 Si 0.934 3.066 11 H -0.270 1.270 12 H -0.293 1.293 13 H -0.248 1.248 14 N -0.530 5.530 15 C 0.069 3.931 16 C 0.068 3.932 17 N -0.556 5.556 18 C 0.027 3.973 19 C 0.067 3.933 20 C 0.049 3.951 21 H 0.093 0.907 22 H 0.028 0.972 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.264 0.736 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 3.468 -14.979 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.297 6.297 3 C -0.008 4.008 4 C 0.079 3.921 5 H 0.024 0.976 6 C -0.521 4.521 7 H 0.059 0.941 8 C -0.182 4.182 9 N -0.589 5.589 10 Si 0.762 3.238 11 H -0.196 1.196 12 H -0.220 1.220 13 H -0.172 1.172 14 N -0.255 5.255 15 C -0.059 4.059 16 C -0.060 4.060 17 N -0.281 5.281 18 C -0.120 4.120 19 C -0.061 4.061 20 C -0.079 4.079 21 H 0.112 0.888 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.667 3.283 -14.811 15.403 hybrid contribution -0.573 0.601 0.992 1.294 sum -3.239 3.884 -13.819 14.715 Atomic orbital electron populations 1.22907 0.81601 1.03280 0.99847 1.88116 1.19323 1.27304 1.94993 1.22888 0.95472 0.84783 0.97664 1.19598 0.90573 0.92933 0.88977 0.97619 1.20936 1.33979 1.07621 0.89559 0.94114 1.25652 0.96765 0.99974 0.95763 1.70015 1.49212 1.40598 0.99028 0.86082 0.79258 0.80900 0.77597 1.19593 1.21998 1.17236 1.61953 1.12612 1.49227 1.01687 1.21962 0.87814 0.98663 0.97509 1.22087 1.00386 0.94364 0.89149 1.62204 1.13327 1.49416 1.03121 1.22398 1.01317 0.97211 0.91108 1.22115 0.87315 0.99332 0.97358 1.22297 1.00399 0.94880 0.90342 0.88838 0.95364 0.92503 0.92426 0.96036 0.92704 0.95862 0.91991 0.95256 0.89139 0.89898 0.90580 0.95706 0.94961 0.88168 0.90046 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.38 -17.13 10.14 -148.98 -1.51 -18.64 16 3 C 0.07 2.99 4.74 71.98 0.34 3.33 16 4 C 0.19 9.01 1.45 44.17 0.06 9.08 16 5 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 6 C -0.48 -28.07 8.02 25.60 0.21 -27.87 16 7 H 0.04 2.66 6.73 -2.91 -0.02 2.64 16 8 C 0.02 0.90 5.45 84.65 0.46 1.36 16 9 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 10 Si 0.93 45.09 24.33 68.60 1.67 46.76 16 11 H -0.27 -12.48 6.90 99.48 0.69 -11.80 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 14 N -0.53 -22.60 4.50 -874.87 -3.94 -26.54 16 15 C 0.07 2.81 5.34 86.31 0.46 3.27 16 16 C 0.07 2.22 5.62 86.31 0.49 2.70 16 17 N -0.56 -15.72 4.97 -921.92 -4.58 -20.30 16 18 C 0.03 0.57 9.60 127.69 1.23 1.79 16 19 C 0.07 1.88 5.62 86.31 0.49 2.36 16 20 C 0.05 1.65 5.30 86.31 0.46 2.11 16 21 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 22 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.06 2.10 6.11 -2.39 -0.01 2.08 16 25 H 0.02 0.98 3.38 -2.39 -0.01 0.97 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 2.91 6.20 -2.38 -0.01 2.90 16 29 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 2.55 8.13 -2.39 -0.02 2.53 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 2.59 6.03 -2.39 -0.01 2.57 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.79 282.23 -1.68 -70.46 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.95 Total: 8.07 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.43 Total: 0.06 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -8.22 Total: -106.71 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.51 Total: -18.64 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.76 kcal Total: -68.79 -1.68 -70.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.697 kcal (2) G-P(sol) polarization free energy of solvation -68.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds