Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00444 * 2 1 4 4 H 1.48499 * 109.46880 * 269.99840 * 3 2 1 5 5 H 1.48491 * 109.47035 * 29.99313 * 3 2 1 6 6 H 1.48501 * 109.47327 * 149.99525 * 3 2 1 7 7 C 1.37878 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00092 * 179.97438 * 10 9 7 12 12 O 1.21703 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.46655 * 120.00294 * 180.02562 * 11 10 9 14 14 C 1.36557 * 125.97840 * 180.02562 * 13 11 10 15 15 C 1.40428 * 106.70959 * 179.97438 * 14 13 11 16 16 Cl 1.73599 * 126.44806 * 179.97438 * 15 14 13 17 17 C 1.35206 * 107.09577 * 0.26052 * 15 14 13 18 18 O 1.33988 * 108.75045 * 359.56994 * 17 15 14 19 19 H 0.97003 * 119.99427 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47254 * 59.99990 * 9 7 2 21 21 H 1.08999 * 109.47472 * 299.99647 * 9 7 2 22 22 H 0.96995 * 120.00411 * 0.02562 * 10 9 7 23 23 H 1.07995 * 126.64372 * 359.93674 * 14 13 11 24 24 H 1.07996 * 125.61581 * 179.70463 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5570 -5.1057 0.0011 13 6 2.7065 -5.9982 0.0016 14 6 2.3878 -7.3260 0.0017 15 6 3.6014 -8.0325 0.0017 16 17 3.7901 -9.7582 0.0024 17 6 4.5951 -7.1157 0.0075 18 8 4.0512 -5.8911 0.0015 19 1 -0.4849 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 3.1565 -3.4356 0.0009 23 1 1.3948 -7.7505 0.0023 24 1 5.6526 -7.3345 0.0136 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766838.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -56.999008 kcal Electronic energy + Delta-G solvation = -12984.463016 eV Core-core repulsion = 10310.487455 eV Total energy + Delta-G solvation = -2673.975561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.88772 -40.42299 -37.73425 -36.33596 -34.49010 -33.92747 -31.35032 -29.20783 -25.54911 -23.62268 -22.89599 -21.52941 -20.06934 -18.33052 -17.61117 -17.26206 -17.13826 -16.20433 -15.98174 -15.46356 -14.71209 -14.39968 -14.27230 -14.06714 -14.01649 -13.40940 -12.96487 -12.72249 -12.25635 -12.01894 -11.53620 -11.36347 -10.85728 -10.82157 -10.10366 -9.69616 -8.30400 -6.47222 -0.11836 0.92231 1.01840 1.44371 1.46827 1.55541 1.59263 2.03944 2.30252 2.50262 3.05104 3.58811 3.73290 4.10053 4.28828 4.73478 4.91039 5.03981 5.18759 5.31741 5.48425 5.68068 5.79989 6.58720 6.68697 7.09530 7.27832 8.81801 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.072108 B = 0.004847 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.213577 B = 5774.901037 C = 6147.969811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.263 3.737 10 N -0.691 5.691 11 C 0.584 3.416 12 O -0.573 6.573 13 C -0.075 4.075 14 C -0.113 4.113 15 C -0.159 4.159 16 Cl -0.016 7.016 17 C 0.043 3.957 18 O -0.151 6.151 19 H 0.270 0.730 20 H -0.002 1.002 21 H -0.001 1.001 22 H 0.411 0.589 23 H 0.166 0.834 24 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 -14.515 0.029 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.598 4.598 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.339 5.339 11 C 0.370 3.630 12 O -0.456 6.456 13 C -0.128 4.128 14 C -0.134 4.134 15 C -0.187 4.187 16 Cl 0.012 6.988 17 C -0.028 4.028 18 O -0.045 6.045 19 H 0.079 0.921 20 H 0.016 0.984 21 H 0.017 0.983 22 H 0.247 0.753 23 H 0.184 0.816 24 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 12.118 -14.360 0.033 18.790 hybrid contribution 0.030 0.502 -0.015 0.503 sum 12.149 -13.858 0.018 18.429 Atomic orbital electron populations 1.70123 1.08209 1.28719 1.49657 1.26027 0.95775 1.03784 0.93663 0.85148 0.78489 0.76914 0.78636 1.19566 1.20839 1.17992 1.21584 0.94345 0.90435 1.53416 0.89853 1.18746 0.88511 0.83608 0.95071 1.46173 1.11835 1.05080 1.70807 1.16987 0.86453 0.82183 0.77376 1.90829 1.16156 1.84765 1.53858 1.21592 0.81199 0.95004 1.14957 1.21872 1.00486 0.90693 1.00399 1.21070 0.93935 0.88091 1.15588 1.98356 1.97402 1.05531 1.97496 1.25183 1.00734 0.78626 0.98296 1.84202 1.18503 1.31733 1.70087 0.92097 0.98377 0.98349 0.75286 0.81613 0.71631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.45 0.28 -54.96 14 2 C 0.01 0.41 5.46 84.66 0.46 0.88 14 3 Si 0.99 41.79 29.54 68.60 2.03 43.81 14 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 14 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 14 7 C -0.56 -30.28 9.28 25.60 0.24 -30.04 14 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 14 9 C 0.26 14.33 5.43 85.63 0.46 14.80 14 10 N -0.69 -30.21 5.54 -470.82 -2.61 -32.82 14 11 C 0.58 24.68 7.79 86.44 0.67 25.35 14 12 O -0.57 -28.71 16.86 -4.36 -0.07 -28.78 14 13 C -0.08 -2.43 7.13 24.08 0.17 -2.25 14 14 C -0.11 -3.16 10.62 22.41 0.24 -2.92 14 15 C -0.16 -3.37 6.71 22.10 0.15 -3.22 14 16 Cl -0.02 -0.29 29.32 -2.72 -0.08 -0.37 14 17 C 0.04 0.73 12.06 67.12 0.81 1.54 14 18 O -0.15 -3.79 10.40 -5.45 -0.06 -3.85 14 19 H 0.27 14.97 8.31 -92.71 -0.77 14.20 14 20 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 14 21 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 14 22 H 0.41 15.35 8.08 -92.71 -0.75 14.60 14 23 H 0.17 4.60 8.06 -2.91 -0.02 4.58 14 24 H 0.27 1.62 8.06 -2.91 -0.02 1.60 14 Total: -1.00 -68.18 247.12 3.19 -64.99 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.49 Total: 7.85 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 3.20 Total: 4.13 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.33 Total: -87.78 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.13 Total: -32.63 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -68.18 3.19 -64.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766838.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.991 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds