Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47193 * 299.99934 * 3 2 1 6 6 H 1.48507 * 109.47335 * 60.00314 * 3 2 1 7 7 C 1.37871 * 120.00647 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99823 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99849 * 179.97438 * 10 9 7 12 12 O 1.21718 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.46492 * 120.00168 * 180.02562 * 11 10 9 14 14 O 1.34994 * 126.00633 * 0.02562 * 13 11 10 15 15 C 1.33940 * 109.40184 * 179.73695 * 14 13 11 16 16 C 1.35071 * 108.82028 * 359.97438 * 15 14 13 17 17 C 1.36708 * 126.01072 * 179.71505 * 13 11 10 18 18 Cl 1.73598 * 126.66467 * 0.26529 * 17 13 11 19 19 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46647 * 60.00103 * 9 7 2 21 21 H 1.08994 * 109.47146 * 300.00405 * 9 7 2 22 22 H 0.96995 * 120.00349 * 0.02562 * 10 9 7 23 23 H 1.07999 * 125.58376 * 180.02562 * 15 14 13 24 24 H 1.08002 * 126.43440 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0018 11 6 1.7541 -4.8833 -0.0015 12 8 0.5574 -5.1057 -0.0006 13 6 2.7061 -5.9967 -0.0021 14 8 4.0518 -5.8902 -0.0026 15 6 4.5950 -7.1145 0.0027 16 6 3.6031 -8.0313 0.0072 17 6 2.3879 -7.3263 0.0036 18 17 0.7924 -8.0103 0.0065 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5566 -0.8904 21 1 0.6249 -2.5571 0.8896 22 1 3.1569 -3.4353 -0.0021 23 1 5.6527 -7.3328 0.0040 24 1 3.7218 -9.1048 0.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829251.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -31.781166 kcal Electronic energy + Delta-G solvation = -13186.452596 eV Core-core repulsion = 10513.570563 eV Total energy + Delta-G solvation = -2672.882033 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.72320 -38.64443 -36.50687 -34.35870 -32.90584 -32.34418 -30.02818 -27.26521 -23.72676 -22.12090 -21.61450 -19.99805 -18.53053 -16.67399 -16.41401 -15.76577 -15.24666 -14.35629 -14.16023 -13.92969 -13.68930 -13.07023 -12.88491 -12.24167 -12.03117 -11.86401 -10.99759 -10.93599 -10.83162 -10.35412 -9.70885 -9.48591 -9.40717 -8.81310 -8.66170 -7.97217 -6.19524 -4.26721 1.07774 2.09054 2.16974 2.86987 3.22926 3.30014 3.33283 3.63071 3.87809 4.32981 4.64809 4.95785 5.16966 5.18093 5.53542 5.72773 6.00176 6.66698 7.20007 7.27747 7.44369 7.61354 7.91048 8.47025 8.66506 8.90481 9.39456 10.90678 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.046881 B = 0.006083 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.119560 B = 4602.186348 C = 5184.156758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.694 5.694 11 C 0.576 3.424 12 O -0.516 6.516 13 C -0.039 4.039 14 O -0.150 6.150 15 C -0.008 4.008 16 C -0.214 4.214 17 C -0.068 4.068 18 Cl -0.010 7.010 19 H 0.266 0.734 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.396 0.604 23 H 0.215 0.785 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.304 -13.893 0.011 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.342 5.342 11 C 0.358 3.642 12 O -0.394 6.394 13 C -0.093 4.093 14 O -0.045 6.045 15 C -0.077 4.077 16 C -0.233 4.233 17 C -0.098 4.098 18 Cl 0.019 6.981 19 H 0.076 0.924 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.230 0.770 23 H 0.231 0.769 24 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.261 -13.633 0.011 15.941 hybrid contribution 0.793 0.615 0.002 1.004 sum 9.055 -13.018 0.013 15.857 Atomic orbital electron populations 1.69979 1.06102 1.27316 1.48784 1.24950 0.94941 0.99505 0.94601 0.86331 0.79836 0.82799 0.77775 1.19588 1.20752 1.20759 1.21237 0.93394 0.90242 1.53393 0.91691 1.19258 0.88173 0.81567 0.98249 1.46462 1.11828 1.05481 1.70380 1.16589 0.86252 0.81757 0.79566 1.90904 1.13529 1.83684 1.51315 1.22576 0.80887 0.95533 1.10312 1.84216 1.18823 1.31359 1.70087 1.24254 0.99589 0.80695 1.03191 1.21603 0.90112 1.01472 1.10143 1.21222 0.89130 0.91877 1.07582 1.98373 1.19493 1.83587 1.96686 0.92415 0.94930 0.94928 0.77044 0.76871 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.29 55.43 0.74 -25.12 14 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 14 3 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 14 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 14 8 H 0.06 1.65 7.60 -52.48 -0.40 1.25 14 9 C 0.25 6.53 5.43 -5.19 -0.03 6.51 14 10 N -0.69 -15.11 5.54 -62.86 -0.35 -15.46 14 11 C 0.58 12.20 7.78 -12.93 -0.10 12.10 14 12 O -0.52 -12.48 15.54 5.17 0.08 -12.40 14 13 C -0.04 -0.67 7.13 -36.81 -0.26 -0.93 14 14 O -0.15 -2.12 10.40 4.74 0.05 -2.07 14 15 C -0.01 -0.08 12.07 29.61 0.36 0.28 14 16 C -0.21 -2.41 10.88 -39.86 -0.43 -2.85 14 17 C -0.07 -1.06 6.76 -39.29 -0.27 -1.32 14 18 Cl -0.01 -0.16 27.84 -51.86 -1.44 -1.61 14 19 H 0.27 7.27 8.31 -40.82 -0.34 6.93 14 20 H 0.03 0.94 8.14 -51.93 -0.42 0.52 14 21 H 0.03 0.94 8.14 -51.93 -0.42 0.52 14 22 H 0.40 7.61 8.07 -40.82 -0.33 7.28 14 23 H 0.21 1.06 8.06 -52.49 -0.42 0.63 14 24 H 0.16 1.33 8.06 -52.49 -0.42 0.91 14 LS Contribution 244.62 15.07 3.69 3.69 Total: -1.00 -31.47 244.62 -4.96 -36.43 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.55 Total: 0.41 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.15 Total: 0.42 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.39 Total: -40.58 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.13 Total: -14.47 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.44 Total: -1.61 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.47 -4.96 -36.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829251.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.648 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds