Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47193 * 299.99934 * 3 2 1 6 6 H 1.48507 * 109.47335 * 60.00314 * 3 2 1 7 7 C 1.37871 * 120.00647 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99823 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99849 * 179.97438 * 10 9 7 12 12 O 1.21718 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.46492 * 120.00168 * 180.02562 * 11 10 9 14 14 O 1.34994 * 126.00633 * 0.02562 * 13 11 10 15 15 C 1.33940 * 109.40184 * 179.73695 * 14 13 11 16 16 C 1.35071 * 108.82028 * 359.97438 * 15 14 13 17 17 C 1.36708 * 126.01072 * 179.71505 * 13 11 10 18 18 Cl 1.73598 * 126.66467 * 0.26529 * 17 13 11 19 19 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46647 * 60.00103 * 9 7 2 21 21 H 1.08994 * 109.47146 * 300.00405 * 9 7 2 22 22 H 0.96995 * 120.00349 * 0.02562 * 10 9 7 23 23 H 1.07999 * 125.58376 * 180.02562 * 15 14 13 24 24 H 1.08002 * 126.43440 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0018 11 6 1.7541 -4.8833 -0.0015 12 8 0.5574 -5.1057 -0.0006 13 6 2.7061 -5.9967 -0.0021 14 8 4.0518 -5.8902 -0.0026 15 6 4.5950 -7.1145 0.0027 16 6 3.6031 -8.0313 0.0072 17 6 2.3879 -7.3263 0.0036 18 17 0.7924 -8.0103 0.0065 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5566 -0.8904 21 1 0.6249 -2.5571 0.8896 22 1 3.1569 -3.4353 -0.0021 23 1 5.6527 -7.3328 0.0040 24 1 3.7218 -9.1048 0.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829251.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -55.040269 kcal Electronic energy + Delta-G solvation = -13187.461186 eV Core-core repulsion = 10513.570563 eV Total energy + Delta-G solvation = -2673.890624 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.80071 -40.36209 -37.73924 -36.27329 -34.47373 -33.86790 -31.33406 -29.17166 -25.46497 -23.57186 -22.83239 -21.50086 -20.01014 -18.31881 -17.57565 -17.28370 -17.10507 -16.16534 -15.90443 -15.23951 -14.79136 -14.46010 -14.09570 -13.99051 -13.93118 -13.41479 -12.92730 -12.75775 -12.26592 -12.08107 -11.48734 -11.16128 -10.84484 -10.72797 -10.09979 -9.66048 -8.30474 -6.47261 -0.15413 0.89823 1.23776 1.43838 1.45135 1.58592 1.73538 2.04085 2.30431 2.50332 3.04684 3.64228 3.76228 4.20008 4.42504 4.76057 5.03495 5.18175 5.19552 5.35443 5.53673 5.72770 5.80510 6.59645 6.71499 7.12409 7.28620 8.81889 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.046881 B = 0.006083 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.119560 B = 4602.186348 C = 5184.156758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.265 3.735 10 N -0.693 5.693 11 C 0.576 3.424 12 O -0.559 6.559 13 C -0.086 4.086 14 O -0.155 6.155 15 C 0.035 3.965 16 C -0.221 4.221 17 C -0.063 4.063 18 Cl -0.023 7.023 19 H 0.270 0.730 20 H -0.004 1.004 21 H -0.004 1.004 22 H 0.409 0.591 23 H 0.275 0.725 24 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.699 -14.643 0.015 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.143 3.857 10 N -0.342 5.342 11 C 0.362 3.638 12 O -0.440 6.440 13 C -0.139 4.139 14 O -0.050 6.050 15 C -0.034 4.034 16 C -0.240 4.240 17 C -0.093 4.093 18 Cl 0.006 6.994 19 H 0.079 0.921 20 H 0.014 0.986 21 H 0.014 0.986 22 H 0.245 0.755 23 H 0.291 0.709 24 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.693 -14.411 0.015 18.558 hybrid contribution -0.177 0.664 0.001 0.687 sum 11.517 -13.747 0.016 17.934 Atomic orbital electron populations 1.70133 1.08210 1.28629 1.49759 1.26061 0.95823 1.03882 0.93742 0.85080 0.79030 0.77165 0.77748 1.17710 1.20347 1.20357 1.21606 0.94304 0.90418 1.53200 0.89897 1.18701 0.88466 0.83623 0.94876 1.46149 1.11685 1.05028 1.71316 1.17005 0.86681 0.82255 0.77858 1.90860 1.15728 1.84545 1.52910 1.21546 0.81992 0.94303 1.16070 1.84204 1.17050 1.33518 1.70255 1.25536 1.01659 0.78568 0.97657 1.22037 0.88071 1.03420 1.10472 1.21695 0.89946 0.91931 1.05701 1.98370 1.20920 1.83497 1.96580 0.92132 0.98565 0.98560 0.75465 0.70939 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 14 2 C 0.00 0.26 5.46 84.65 0.46 0.73 14 3 Si 0.99 42.34 29.54 68.60 2.03 44.37 14 4 H -0.25 -10.07 7.11 99.48 0.71 -9.37 14 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 14 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 14 7 C -0.56 -30.61 9.28 25.60 0.24 -30.37 14 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 14 9 C 0.27 14.78 5.43 85.64 0.46 15.24 14 10 N -0.69 -31.28 5.54 -470.98 -2.61 -33.89 14 11 C 0.58 25.35 7.78 86.39 0.67 26.02 14 12 O -0.56 -28.63 15.54 -4.40 -0.07 -28.70 14 13 C -0.09 -2.90 7.13 24.06 0.17 -2.73 14 14 O -0.16 -3.96 10.40 -5.96 -0.06 -4.02 14 15 C 0.03 0.52 12.07 67.09 0.81 1.33 14 16 C -0.22 -4.07 10.88 22.09 0.24 -3.83 14 17 C -0.06 -1.85 6.76 22.46 0.15 -1.70 14 18 Cl -0.02 -0.72 27.84 -2.72 -0.08 -0.79 14 19 H 0.27 15.09 8.31 -92.71 -0.77 14.32 14 20 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 14 21 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 14 22 H 0.41 15.86 8.07 -92.71 -0.75 15.11 14 23 H 0.28 0.57 8.06 -2.91 -0.02 0.54 14 24 H 0.20 2.19 8.06 -2.91 -0.02 2.17 14 Total: -1.00 -72.76 244.62 3.20 -69.56 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.49 Total: 4.46 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 3.21 Total: 4.68 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -2.33 Total: -89.55 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.13 Total: -32.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -72.76 3.20 -69.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829251.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.518 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds