Wall clock time and date at job start Mon Mar 30 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00311 * 2 1 4 4 C 1.46901 * 111.00348 * 123.95761 * 2 1 3 5 5 C 1.52992 * 109.47099 * 66.03970 * 4 2 1 6 6 N 1.46902 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.46895 * 111.00372 * 177.19518 * 6 5 4 8 8 C 1.50697 * 110.44016 * 57.74318 * 7 6 5 9 9 H 1.07999 * 119.99730 * 240.58160 * 8 7 6 10 10 C 1.37878 * 119.99934 * 60.57101 * 8 7 6 11 11 N 1.31512 * 119.99861 * 353.42198 * 10 8 7 12 12 Si 1.86803 * 119.99882 * 173.41949 * 10 8 7 13 13 H 1.48494 * 109.47296 * 90.00035 * 12 10 8 14 14 H 1.48498 * 109.47076 * 210.00455 * 12 10 8 15 15 H 1.48505 * 109.47102 * 330.00142 * 12 10 8 16 16 C 1.54814 * 110.48798 * 180.43054 * 7 6 5 17 17 C 1.55001 * 102.09408 * 97.79450 * 16 7 6 18 18 O 1.44384 * 103.48807 * 37.02291 * 17 16 7 19 19 C 1.43742 * 106.97627 * 319.94123 * 18 17 16 20 20 H 1.09003 * 109.47573 * 59.99921 * 1 2 3 21 21 H 1.09006 * 109.47300 * 300.00158 * 1 2 3 22 22 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47005 * 63.94894 * 3 2 1 24 24 H 1.08998 * 109.47673 * 183.95737 * 3 2 1 25 25 H 1.09009 * 109.46812 * 303.95541 * 3 2 1 26 26 H 1.08994 * 109.47276 * 186.04571 * 4 2 1 27 27 H 1.09005 * 109.46483 * 306.04601 * 4 2 1 28 28 H 1.09002 * 109.47840 * 300.00318 * 5 4 2 29 29 H 1.09003 * 109.47413 * 60.00692 * 5 4 2 30 30 H 1.00903 * 110.99586 * 53.24062 * 6 5 4 31 31 H 0.97001 * 119.99619 * 179.97438 * 11 10 8 32 32 H 1.08995 * 110.90950 * 215.99347 * 16 7 6 33 33 H 1.08999 * 110.90934 * 339.59663 * 16 7 6 34 34 H 1.08997 * 110.61786 * 278.52131 * 17 16 7 35 35 H 1.08993 * 110.61616 * 155.52538 * 17 16 7 36 36 H 1.09004 * 109.87705 * 267.08934 * 19 18 17 37 37 H 1.08997 * 110.00252 * 146.00664 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9703 6 7 2.1574 -3.0086 2.1081 7 6 1.7695 -4.4224 2.0154 8 6 2.2607 -5.0191 0.7217 9 1 1.5548 -5.4220 0.0105 10 6 3.6113 -5.0505 0.4459 11 7 4.4603 -4.4461 1.2480 12 14 4.2349 -5.9515 -1.0669 13 1 4.2741 -5.0158 -2.2193 14 1 5.6009 -6.4719 -0.8051 15 1 3.3255 -7.0833 -1.3789 16 6 2.3205 -5.2159 3.2251 17 6 1.0934 -5.2594 4.1711 18 8 -0.0228 -5.4107 3.2679 19 6 0.2400 -4.5708 2.1314 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.7043 1.8723 0.9233 24 1 3.0828 1.3432 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 3.0797 -0.6611 1.1755 27 1 1.5611 -0.3873 2.0627 28 1 0.5471 -2.3475 0.9323 29 1 2.0657 -2.6214 0.0451 30 1 1.8565 -2.6077 2.9838 31 1 5.4105 -4.4685 1.0542 32 1 2.6183 -6.2213 2.9277 33 1 3.1522 -4.6872 3.6909 34 1 1.0091 -4.3295 4.7333 35 1 1.1594 -6.1126 4.8461 36 1 -0.2171 -3.5924 2.2799 37 1 -0.1572 -5.0319 1.2272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:47 Heat of formation + Delta-G solvation = -50.132751 kcal Electronic energy + Delta-G solvation = -17019.429927 eV Core-core repulsion = 14410.260890 eV Total energy + Delta-G solvation = -2609.169037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46850 -38.54648 -36.26117 -34.01262 -31.82284 -30.07281 -28.50027 -28.15395 -26.59562 -24.37013 -23.10202 -21.66653 -21.18483 -18.39566 -17.20281 -16.72599 -16.62988 -16.37882 -16.02380 -15.80984 -15.64204 -14.77649 -14.51450 -14.25583 -13.67565 -13.51161 -13.22276 -12.95482 -12.74633 -12.68811 -12.59110 -12.47673 -12.29473 -12.01966 -11.92804 -11.60000 -11.32768 -10.86902 -10.54247 -10.35776 -9.26174 -8.62868 -7.91239 -6.08451 1.42373 1.46033 1.52830 2.49074 2.96561 3.22976 3.31341 3.91485 4.15222 4.25513 4.28014 4.36773 4.40374 4.46649 4.49422 4.52778 4.67418 4.70754 4.72788 4.78267 4.93252 5.00258 5.02536 5.13817 5.20730 5.33080 5.43742 5.66920 5.78776 6.06278 6.11803 6.18551 6.25349 6.70149 6.91742 7.28213 7.59088 9.08924 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.010759 C = 0.007784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.262259 B = 2601.741251 C = 3596.297893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.566 5.566 3 C 0.029 3.971 4 C 0.073 3.927 5 C 0.096 3.904 6 N -0.650 5.650 7 C 0.218 3.782 8 C -0.538 4.538 9 H 0.040 0.960 10 C 0.051 3.949 11 N -0.857 5.857 12 Si 0.928 3.072 13 H -0.283 1.283 14 H -0.284 1.284 15 H -0.276 1.276 16 C -0.112 4.112 17 C 0.042 3.958 18 O -0.404 6.404 19 C 0.027 3.973 20 H 0.081 0.919 21 H 0.030 0.970 22 H 0.058 0.942 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.308 0.692 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 7.845 1.869 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.119 4.119 4 C -0.055 4.055 5 C -0.033 4.033 6 N -0.280 5.280 7 C 0.128 3.872 8 C -0.576 4.576 9 H 0.058 0.942 10 C -0.155 4.155 11 N -0.491 5.491 12 Si 0.755 3.245 13 H -0.209 1.209 14 H -0.210 1.210 15 H -0.201 1.201 16 C -0.151 4.151 17 C -0.034 4.034 18 O -0.323 6.323 19 C -0.052 4.052 20 H 0.100 0.900 21 H 0.049 0.951 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.407 7.439 1.219 8.732 hybrid contribution -0.455 -0.052 -0.063 0.462 sum -4.862 7.388 1.156 8.919 Atomic orbital electron populations 1.22433 0.86751 1.01954 1.01211 1.61844 1.08869 1.14780 1.43620 1.22386 1.00710 0.87713 1.01112 1.21908 0.99672 0.93206 0.90725 1.21416 0.94790 0.91520 0.95607 1.60500 1.63269 1.01981 1.02223 1.19715 0.86644 0.86124 0.94702 1.20911 0.91950 1.40898 1.03874 0.94199 1.25375 0.97243 0.94946 0.97901 1.70232 1.01667 1.39911 1.37297 0.86057 0.77662 0.79286 0.81495 1.20877 1.20965 1.20094 1.22808 0.96910 0.99671 0.95741 1.23760 0.85289 1.01770 0.92624 1.88705 1.44028 1.67517 1.32097 1.24065 0.99903 0.92899 0.88308 0.90028 0.95110 0.92322 0.95122 0.91777 0.89973 0.91825 0.94942 0.97165 0.93376 0.87569 0.93863 0.93637 0.91421 0.91717 0.88136 0.93780 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.40 127.69 1.20 1.84 16 2 N -0.57 -17.41 5.02 -948.86 -4.76 -22.17 16 3 C 0.03 0.69 9.57 127.69 1.22 1.91 16 4 C 0.07 2.54 5.19 86.30 0.45 2.99 16 5 C 0.10 3.98 5.02 86.30 0.43 4.42 16 6 N -0.65 -28.65 5.31 -468.98 -2.49 -31.14 16 7 C 0.22 10.23 0.41 3.77 0.00 10.23 16 8 C -0.54 -28.71 6.57 25.60 0.17 -28.54 16 9 H 0.04 2.19 7.37 -2.91 -0.02 2.17 16 10 C 0.05 2.72 5.25 84.66 0.44 3.16 16 11 N -0.86 -47.07 12.15 21.45 0.26 -46.81 16 12 Si 0.93 43.40 29.54 68.60 2.03 45.43 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 C -0.11 -5.02 5.58 31.90 0.18 -4.85 16 17 C 0.04 1.53 7.72 72.67 0.56 2.09 16 18 O -0.40 -17.04 11.52 -148.98 -1.72 -18.76 16 19 C 0.03 1.17 6.46 72.36 0.47 1.64 16 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.03 0.72 8.14 -2.38 -0.02 0.71 16 22 H 0.06 1.69 6.30 -2.39 -0.02 1.67 16 23 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 25 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 27 H 0.03 1.03 8.12 -2.38 -0.02 1.02 16 28 H 0.01 0.42 4.95 -2.39 -0.01 0.41 16 29 H 0.05 2.39 7.19 -2.39 -0.02 2.37 16 30 H 0.31 12.24 8.69 -89.69 -0.78 11.46 16 31 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.04 2.21 7.87 -2.39 -0.02 2.19 16 33 H 0.07 3.13 8.06 -2.39 -0.02 3.11 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.04 1.76 6.83 -2.38 -0.02 1.75 16 37 H 0.06 2.83 7.41 -2.39 -0.02 2.81 16 Total: -1.00 -58.57 292.15 -1.30 -59.87 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.26 Total: 18.68 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.12 Total: -5.10 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.99 Total: -100.12 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.72 Total: -18.76 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -58.57 -1.30 -59.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.738 kcal (2) G-P(sol) polarization free energy of solvation -58.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds