Wall clock time and date at job start Mon Mar 30 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00290 * 2 1 4 4 C 1.46895 * 111.00039 * 123.95634 * 2 1 3 5 5 C 1.52994 * 109.47207 * 66.04638 * 4 2 1 6 6 N 1.46909 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.46900 * 110.99907 * 183.53557 * 6 5 4 8 8 C 1.50695 * 110.56420 * 58.80933 * 7 6 5 9 9 H 1.08003 * 119.99648 * 237.61175 * 8 7 6 10 10 C 1.37874 * 120.00318 * 57.61069 * 8 7 6 11 11 N 1.31508 * 120.00261 * 353.76711 * 10 8 7 12 12 Si 1.86804 * 119.99886 * 173.76456 * 10 8 7 13 13 H 1.48501 * 109.46857 * 90.00401 * 12 10 8 14 14 H 1.48503 * 109.47123 * 209.99982 * 12 10 8 15 15 H 1.48492 * 109.47202 * 330.00207 * 12 10 8 16 16 C 1.54509 * 110.51128 * 296.12528 * 7 6 5 17 17 C 1.54477 * 104.06270 * 241.35954 * 16 7 6 18 18 O 1.44426 * 104.80554 * 336.02138 * 17 16 7 19 19 C 1.44421 * 105.27172 * 40.51195 * 18 17 16 20 20 H 1.08997 * 109.47020 * 296.04605 * 1 2 3 21 21 H 1.09005 * 109.47480 * 56.04444 * 1 2 3 22 22 H 1.08998 * 109.47370 * 176.04435 * 1 2 3 23 23 H 1.08995 * 109.46967 * 183.95688 * 3 2 1 24 24 H 1.09005 * 109.46594 * 303.95780 * 3 2 1 25 25 H 1.08996 * 109.46788 * 63.95174 * 3 2 1 26 26 H 1.09004 * 109.47039 * 306.04094 * 4 2 1 27 27 H 1.09011 * 109.47193 * 186.04539 * 4 2 1 28 28 H 1.09000 * 109.47517 * 60.00287 * 5 4 2 29 29 H 1.09005 * 109.46963 * 299.99621 * 5 4 2 30 30 H 1.00897 * 110.99723 * 59.57832 * 6 5 4 31 31 H 0.96995 * 120.00325 * 179.97438 * 11 10 8 32 32 H 1.09000 * 110.50994 * 122.71149 * 16 7 6 33 33 H 1.09006 * 110.51075 * 0.02562 * 16 7 6 34 34 H 1.09006 * 110.37150 * 217.19494 * 17 16 7 35 35 H 1.08996 * 110.47014 * 94.89967 * 17 16 7 36 36 H 1.09000 * 110.37325 * 78.32531 * 19 18 17 37 37 H 1.09000 * 110.37084 * 200.65915 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9702 6 7 2.1574 -3.0086 2.1081 7 6 1.8994 -4.4449 1.9401 8 6 2.5332 -4.9516 0.6703 9 1 1.9246 -5.4278 -0.0842 10 6 3.8899 -4.8073 0.4717 11 7 4.6109 -4.1208 1.3310 12 14 4.7040 -5.5871 -1.0178 13 1 4.6876 -4.6266 -2.1503 14 1 6.1084 -5.9386 -0.6871 15 1 3.9631 -6.8159 -1.4002 16 6 0.3799 -4.7252 1.9362 17 6 0.1660 -5.6517 3.1536 18 8 1.4485 -6.2797 3.3694 19 6 2.4236 -5.2352 3.1596 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.5611 -0.3872 2.0628 27 1 3.0798 -0.6611 1.1756 28 1 2.0658 -2.6214 0.0450 29 1 0.5471 -2.3475 0.9323 30 1 1.7744 -2.6717 2.9787 31 1 5.5654 -4.0196 1.1915 32 1 0.0871 -5.2303 1.0157 33 1 -0.1798 -3.7979 2.0585 34 1 -0.5916 -6.4030 2.9303 35 1 -0.1238 -5.0702 4.0289 36 1 2.4811 -4.5883 4.0349 37 1 3.4005 -5.6665 2.9407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:49 Heat of formation + Delta-G solvation = -27.875687 kcal Electronic energy + Delta-G solvation = -17016.268068 eV Core-core repulsion = 14408.064170 eV Total energy + Delta-G solvation = -2608.203898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.63442 -37.21046 -34.57109 -32.05704 -30.07855 -28.38284 -27.36291 -26.39306 -24.75839 -22.70080 -21.79904 -20.16586 -19.20264 -16.34599 -15.46354 -15.24824 -14.99922 -14.83548 -14.35005 -14.26768 -13.98356 -13.45427 -12.79711 -12.40107 -12.19705 -12.08601 -11.81686 -11.47596 -11.35318 -10.91722 -10.81959 -10.75178 -10.54654 -10.43365 -10.04310 -9.85081 -9.59351 -9.13433 -8.68150 -8.27889 -8.03392 -6.86942 -5.85109 -3.98628 3.36502 3.43643 3.47625 4.25600 4.49921 4.99999 5.32611 5.39644 5.43813 5.57088 5.62025 5.70186 5.78769 5.87202 5.89998 5.98248 6.01882 6.06767 6.16395 6.29398 6.35432 6.56016 6.64046 6.77040 6.81202 7.00132 7.16379 7.36533 7.44846 7.54592 7.77813 7.89682 8.17580 8.58374 8.83013 9.13154 9.66892 11.15788 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.010601 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.214385 B = 2640.709608 C = 3613.087802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.028 3.972 4 C 0.061 3.939 5 C 0.087 3.913 6 N -0.640 5.640 7 C 0.228 3.772 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.083 3.917 11 N -0.839 5.839 12 Si 0.879 3.121 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.184 4.184 17 C 0.048 3.952 18 O -0.388 6.388 19 C 0.070 3.930 20 H 0.018 0.982 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.002 0.998 30 H 0.295 0.705 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 6.677 0.624 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.120 4.120 4 C -0.067 4.067 5 C -0.043 4.043 6 N -0.269 5.269 7 C 0.138 3.862 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.124 4.124 11 N -0.473 5.473 12 Si 0.706 3.294 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.224 4.224 17 C -0.029 4.029 18 O -0.306 6.306 19 C -0.007 4.007 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.020 0.980 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.460 6.257 0.053 8.305 hybrid contribution -0.832 0.317 0.059 0.892 sum -6.292 6.574 0.112 9.101 Atomic orbital electron populations 1.22405 0.88158 1.02408 0.99449 1.61890 1.07414 1.13093 1.44585 1.22336 1.00899 0.89205 0.99607 1.22168 1.00723 0.94748 0.89044 1.21578 0.94629 0.90218 0.97879 1.60487 1.61808 1.03468 1.01132 1.19760 0.86332 0.84853 0.95212 1.20725 0.92688 1.39742 1.02464 0.92715 1.24916 0.97405 0.94196 0.95851 1.70140 1.05863 1.36446 1.34890 0.86826 0.78842 0.79922 0.83779 1.20737 1.21300 1.20028 1.23774 1.02055 0.98317 0.98252 1.23169 0.87745 0.95718 0.96296 1.89031 1.15543 1.34668 1.91397 1.23458 0.92921 0.88754 0.95560 0.96354 0.92098 0.90946 0.91395 0.91969 0.96282 0.96397 0.89990 0.89123 0.98004 0.88897 0.93535 0.91389 0.93106 0.91053 0.94303 0.95387 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.32 60.06 0.56 0.90 16 2 N -0.55 -8.87 5.02 -251.26 -1.26 -10.13 16 3 C 0.03 0.38 9.57 60.07 0.57 0.95 16 4 C 0.06 1.10 5.25 -3.83 -0.02 1.08 16 5 C 0.09 1.79 5.04 -3.82 -0.02 1.77 16 6 N -0.64 -14.27 5.16 -99.54 -0.51 -14.78 16 7 C 0.23 5.38 0.48 -131.19 -0.06 5.32 16 8 C -0.52 -13.73 6.64 -34.44 -0.23 -13.96 16 9 H 0.05 1.49 7.39 -52.48 -0.39 1.10 16 10 C 0.08 2.23 4.96 -17.82 -0.09 2.14 16 11 N -0.84 -22.95 11.77 55.43 0.65 -22.29 16 12 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.18 -3.79 5.91 -25.16 -0.15 -3.94 16 17 C 0.05 0.93 7.63 37.93 0.29 1.22 16 18 O -0.39 -8.95 11.65 -35.23 -0.41 -9.36 16 19 C 0.07 1.68 6.55 37.93 0.25 1.92 16 20 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 22 H 0.07 1.07 6.47 -51.93 -0.34 0.73 16 23 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 24 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.02 0.31 8.12 -51.93 -0.42 -0.12 16 27 H 0.08 1.62 8.06 -51.92 -0.42 1.21 16 28 H 0.09 2.21 6.99 -51.93 -0.36 1.85 16 29 H 0.00 0.04 5.12 -51.93 -0.27 -0.22 16 30 H 0.30 6.08 8.63 -39.29 -0.34 5.74 16 31 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.07 1.45 7.46 -51.93 -0.39 1.06 16 33 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 37 H 0.10 2.66 6.96 -51.93 -0.36 2.30 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -27.89 290.90 -7.20 -35.09 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.13 Total: 3.63 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 1.11 Total: -2.59 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.12 Total: -47.21 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.41 Total: -9.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.89 -7.20 -35.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.211 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds