Wall clock time and date at job start Mon Mar 30 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00290 * 2 1 4 4 C 1.46895 * 111.00039 * 123.95634 * 2 1 3 5 5 C 1.52994 * 109.47207 * 66.04638 * 4 2 1 6 6 N 1.46909 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.46900 * 110.99907 * 183.53557 * 6 5 4 8 8 C 1.50695 * 110.56420 * 58.80933 * 7 6 5 9 9 H 1.08003 * 119.99648 * 237.61175 * 8 7 6 10 10 C 1.37874 * 120.00318 * 57.61069 * 8 7 6 11 11 N 1.31508 * 120.00261 * 353.76711 * 10 8 7 12 12 Si 1.86804 * 119.99886 * 173.76456 * 10 8 7 13 13 H 1.48501 * 109.46857 * 90.00401 * 12 10 8 14 14 H 1.48503 * 109.47123 * 209.99982 * 12 10 8 15 15 H 1.48492 * 109.47202 * 330.00207 * 12 10 8 16 16 C 1.54509 * 110.51128 * 296.12528 * 7 6 5 17 17 C 1.54477 * 104.06270 * 241.35954 * 16 7 6 18 18 O 1.44426 * 104.80554 * 336.02138 * 17 16 7 19 19 C 1.44421 * 105.27172 * 40.51195 * 18 17 16 20 20 H 1.08997 * 109.47020 * 296.04605 * 1 2 3 21 21 H 1.09005 * 109.47480 * 56.04444 * 1 2 3 22 22 H 1.08998 * 109.47370 * 176.04435 * 1 2 3 23 23 H 1.08995 * 109.46967 * 183.95688 * 3 2 1 24 24 H 1.09005 * 109.46594 * 303.95780 * 3 2 1 25 25 H 1.08996 * 109.46788 * 63.95174 * 3 2 1 26 26 H 1.09004 * 109.47039 * 306.04094 * 4 2 1 27 27 H 1.09011 * 109.47193 * 186.04539 * 4 2 1 28 28 H 1.09000 * 109.47517 * 60.00287 * 5 4 2 29 29 H 1.09005 * 109.46963 * 299.99621 * 5 4 2 30 30 H 1.00897 * 110.99723 * 59.57832 * 6 5 4 31 31 H 0.96995 * 120.00325 * 179.97438 * 11 10 8 32 32 H 1.09000 * 110.50994 * 122.71149 * 16 7 6 33 33 H 1.09006 * 110.51075 * 0.02562 * 16 7 6 34 34 H 1.09006 * 110.37150 * 217.19494 * 17 16 7 35 35 H 1.08996 * 110.47014 * 94.89967 * 17 16 7 36 36 H 1.09000 * 110.37325 * 78.32531 * 19 18 17 37 37 H 1.09000 * 110.37084 * 200.65915 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9702 6 7 2.1574 -3.0086 2.1081 7 6 1.8994 -4.4449 1.9401 8 6 2.5332 -4.9516 0.6703 9 1 1.9246 -5.4278 -0.0842 10 6 3.8899 -4.8073 0.4717 11 7 4.6109 -4.1208 1.3310 12 14 4.7040 -5.5871 -1.0178 13 1 4.6876 -4.6266 -2.1503 14 1 6.1084 -5.9386 -0.6871 15 1 3.9631 -6.8159 -1.4002 16 6 0.3799 -4.7252 1.9362 17 6 0.1660 -5.6517 3.1536 18 8 1.4485 -6.2797 3.3694 19 6 2.4236 -5.2352 3.1596 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.5611 -0.3872 2.0628 27 1 3.0798 -0.6611 1.1756 28 1 2.0658 -2.6214 0.0450 29 1 0.5471 -2.3475 0.9323 30 1 1.7744 -2.6717 2.9787 31 1 5.5654 -4.0196 1.1915 32 1 0.0871 -5.2303 1.0157 33 1 -0.1798 -3.7979 2.0585 34 1 -0.5916 -6.4030 2.9303 35 1 -0.1238 -5.0702 4.0289 36 1 2.4811 -4.5883 4.0349 37 1 3.4005 -5.6665 2.9407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:49 Heat of formation + Delta-G solvation = -48.851438 kcal Electronic energy + Delta-G solvation = -17017.177645 eV Core-core repulsion = 14408.064170 eV Total energy + Delta-G solvation = -2609.113475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37977 -38.53755 -36.28616 -34.01992 -31.73792 -30.03879 -28.46180 -28.04980 -26.71088 -24.12959 -23.44611 -21.62322 -21.04385 -18.25940 -17.15112 -16.88084 -16.56936 -16.27145 -16.06234 -15.82840 -15.47434 -14.97148 -14.49220 -14.02764 -13.85575 -13.57574 -13.23716 -12.81662 -12.67447 -12.59688 -12.57097 -12.42238 -12.31902 -12.16902 -11.79630 -11.53368 -11.39428 -10.95683 -10.61101 -10.23851 -9.24624 -8.60095 -7.89250 -6.07265 1.42410 1.45730 1.52775 2.49792 2.97603 3.26755 3.42663 3.91711 4.15900 4.20279 4.29177 4.31874 4.41588 4.44022 4.54054 4.61254 4.70390 4.72820 4.76236 4.84255 4.98134 5.00516 5.02930 5.10191 5.21850 5.28242 5.45220 5.60680 5.79842 6.03794 6.13897 6.20229 6.27692 6.70745 6.95492 7.31517 7.59968 9.09058 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.010601 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.214385 B = 2640.709608 C = 3613.087802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.567 5.567 3 C 0.029 3.971 4 C 0.075 3.925 5 C 0.100 3.900 6 N -0.652 5.652 7 C 0.220 3.780 8 C -0.530 4.530 9 H 0.039 0.961 10 C 0.047 3.953 11 N -0.858 5.858 12 Si 0.927 3.073 13 H -0.282 1.282 14 H -0.284 1.284 15 H -0.277 1.277 16 C -0.177 4.177 17 C 0.047 3.953 18 O -0.407 6.407 19 C 0.078 3.922 20 H 0.030 0.970 21 H 0.081 0.919 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.014 0.986 30 H 0.308 0.692 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 7.640 0.844 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.292 5.292 3 C -0.119 4.119 4 C -0.053 4.053 5 C -0.030 4.030 6 N -0.282 5.282 7 C 0.130 3.870 8 C -0.569 4.569 9 H 0.057 0.943 10 C -0.158 4.158 11 N -0.492 5.492 12 Si 0.754 3.246 13 H -0.208 1.208 14 H -0.210 1.210 15 H -0.202 1.202 16 C -0.217 4.217 17 C -0.030 4.030 18 O -0.326 6.326 19 C 0.000 4.000 20 H 0.048 0.952 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.870 7.225 0.268 9.973 hybrid contribution -0.456 0.024 -0.026 0.458 sum -7.326 7.250 0.242 10.309 Atomic orbital electron populations 1.22423 0.86638 1.02172 1.00985 1.61845 1.08962 1.14674 1.43721 1.22379 1.00612 0.87830 1.01089 1.21881 0.99443 0.93430 0.90556 1.21371 0.94727 0.91469 0.95404 1.60296 1.62710 1.03035 1.02180 1.19700 0.88115 0.85450 0.93729 1.20941 0.92934 1.39624 1.03356 0.94250 1.25412 0.97958 0.94695 0.97771 1.70221 1.05710 1.37356 1.35962 0.86069 0.78050 0.79009 0.81462 1.20777 1.21013 1.20204 1.23644 1.00016 0.99483 0.98549 1.23408 0.86551 0.96390 0.96610 1.88996 1.16968 1.35094 1.91517 1.23209 0.91895 0.88768 0.96105 0.95169 0.90051 0.92167 0.92022 0.89930 0.95143 0.94999 0.92298 0.93362 0.96856 0.87490 0.93836 0.92587 0.91176 0.88586 0.91615 0.94354 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.32 127.69 1.19 1.85 16 2 N -0.57 -17.53 5.02 -948.85 -4.76 -22.29 16 3 C 0.03 0.71 9.57 127.69 1.22 1.93 16 4 C 0.08 2.65 5.25 86.30 0.45 3.11 16 5 C 0.10 4.10 5.04 86.30 0.43 4.54 16 6 N -0.65 -28.77 5.16 -468.83 -2.42 -31.19 16 7 C 0.22 10.33 0.48 3.80 0.00 10.33 16 8 C -0.53 -28.52 6.64 25.60 0.17 -28.35 16 9 H 0.04 2.18 7.39 -2.91 -0.02 2.16 16 10 C 0.05 2.52 4.96 84.65 0.42 2.94 16 11 N -0.86 -47.67 11.77 21.45 0.25 -47.42 16 12 Si 0.93 43.98 29.54 68.60 2.03 46.01 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 C -0.18 -7.01 5.91 31.61 0.19 -6.82 16 17 C 0.05 1.69 7.63 72.48 0.55 2.24 16 18 O -0.41 -18.32 11.65 -148.98 -1.74 -20.05 16 19 C 0.08 3.70 6.55 72.49 0.47 4.17 16 20 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 21 H 0.08 1.73 8.12 -2.38 -0.02 1.71 16 22 H 0.06 1.66 6.47 -2.39 -0.02 1.65 16 23 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 24 H 0.08 1.68 8.12 -2.38 -0.02 1.66 16 25 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.03 1.03 8.12 -2.38 -0.02 1.01 16 27 H 0.06 2.33 8.06 -2.38 -0.02 2.32 16 28 H 0.05 2.39 6.99 -2.39 -0.02 2.38 16 29 H 0.01 0.52 5.12 -2.38 -0.01 0.51 16 30 H 0.31 12.23 8.63 -89.70 -0.77 11.45 16 31 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 32 H 0.06 2.33 7.46 -2.39 -0.02 2.31 16 33 H 0.07 2.47 6.75 -2.38 -0.02 2.46 16 34 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.72 7.92 -2.39 -0.02 1.70 16 37 H 0.07 3.59 6.96 -2.39 -0.02 3.58 16 Total: -1.00 -59.65 290.90 -1.26 -60.91 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.27 Total: 18.10 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.11 Total: -4.06 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -6.93 Total: -100.90 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.74 Total: -20.05 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.65 -1.26 -60.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -59.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds