Wall clock time and date at job start Mon Mar 30 2020 03:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47067 * 240.00466 * 3 2 1 5 5 H 1.48500 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46938 * 120.00234 * 3 2 1 7 7 C 1.37878 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00424 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47077 * 59.99821 * 9 7 2 11 11 N 1.46907 * 109.46647 * 300.00230 * 9 7 2 12 12 C 1.50698 * 109.47348 * 180.02562 * 9 7 2 13 13 C 1.38276 * 119.96526 * 99.99915 * 12 9 7 14 14 C 1.38231 * 120.13379 * 179.97438 * 13 12 9 15 15 C 1.38390 * 120.07203 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.03523 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.93193 * 0.02562 * 15 14 13 18 18 O 1.36015 * 120.06744 * 179.97438 * 17 15 14 19 19 C 1.38355 * 119.96130 * 280.29424 * 12 9 7 20 20 F 1.35093 * 120.03899 * 0.02562 * 19 12 9 21 21 H 0.96993 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99635 * 176.04365 * 11 9 7 23 23 H 1.00896 * 111.00117 * 299.99162 * 11 9 7 24 24 H 1.07992 * 119.92910 * 0.02562 * 13 12 9 25 25 H 1.08006 * 119.96122 * 180.02562 * 14 13 12 26 26 H 0.96701 * 113.99784 * 90.00803 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1993 12 6 2.2304 -3.6446 -0.0005 13 6 2.5211 -4.3047 1.1792 14 6 3.4184 -5.3562 1.1831 15 6 4.0291 -5.7511 0.0057 16 9 4.9056 -6.7792 0.0103 17 6 3.7401 -5.0897 -1.1801 18 8 4.3392 -5.4752 -2.3388 19 6 2.8422 -4.0306 -1.1799 20 9 2.5625 -3.3810 -2.3309 21 1 -0.4850 0.8400 0.0004 22 1 -0.1570 -3.4138 1.1908 23 1 0.9653 -2.5260 2.0381 24 1 2.0454 -3.9987 2.0992 25 1 3.6431 -5.8701 2.1061 26 1 3.8509 -6.1515 -2.8278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259970855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:08 Heat of formation + Delta-G solvation = -103.020394 kcal Electronic energy + Delta-G solvation = -15766.712540 eV Core-core repulsion = 12674.777756 eV Total energy + Delta-G solvation = -3091.934784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.74293 -48.31822 -39.10155 -37.06826 -34.31727 -31.65799 -29.83772 -28.70986 -26.13600 -23.28241 -22.56555 -20.58013 -18.23606 -17.53632 -17.06925 -16.63856 -15.81910 -15.23817 -15.01154 -14.78332 -14.52370 -14.20619 -13.98362 -13.80329 -12.86278 -12.68789 -12.20290 -11.78677 -11.28057 -11.12952 -10.82065 -10.79231 -10.56888 -9.90694 -9.41935 -8.50725 -8.47924 -8.04149 -7.30227 -5.94947 -4.11146 1.20002 1.33874 3.33651 3.37821 3.40878 3.63966 3.93715 4.37082 4.45398 4.81227 5.02991 5.21226 5.30469 5.46910 5.92587 6.04576 6.11229 6.33674 6.39179 6.57356 6.97980 7.27232 7.64178 7.82042 8.04432 8.46454 8.84333 9.01305 9.58065 11.09307 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.008324 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.478655 B = 3363.113045 C = 3620.996369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.258 3.742 10 H 0.057 0.943 11 N -0.808 5.808 12 C -0.102 4.102 13 C -0.087 4.087 14 C -0.149 4.149 15 C 0.072 3.928 16 F -0.137 7.137 17 C 0.031 3.969 18 O -0.480 6.480 19 C 0.109 3.891 20 F -0.117 7.117 21 H 0.258 0.742 22 H 0.301 0.699 23 H 0.320 0.680 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -10.749 0.808 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.148 3.852 10 H 0.075 0.925 11 N -0.335 5.335 12 C -0.106 4.106 13 C -0.105 4.105 14 C -0.168 4.168 15 C 0.052 3.948 16 F -0.115 7.115 17 C -0.016 4.016 18 O -0.289 6.289 19 C 0.088 3.912 20 F -0.095 7.095 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.134 0.866 24 H 0.158 0.842 25 H 0.155 0.845 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.781 -9.541 0.657 10.283 hybrid contribution 0.924 -0.427 -0.163 1.031 sum 4.705 -9.967 0.494 11.033 Atomic orbital electron populations 1.70080 1.05690 1.26097 1.46042 1.24910 0.94689 0.98615 0.93864 0.86751 0.79730 0.83284 0.78699 1.20210 1.21206 1.20231 1.20685 0.92167 0.89054 1.55356 0.92810 1.18202 0.87294 0.88196 0.91540 0.92548 1.59122 1.27881 1.42255 1.04197 1.22093 0.99364 0.98584 0.90520 1.20808 0.97134 0.94220 0.98340 1.21033 0.99269 0.99836 0.96683 1.17598 0.94254 0.88900 0.94074 1.91459 1.66661 1.56168 1.97236 1.18371 0.98939 0.97915 0.86401 1.84920 1.49409 1.61513 1.33066 1.17647 0.96837 0.93195 0.83508 1.91519 1.91914 1.79526 1.46511 0.93195 0.88793 0.86638 0.84215 0.84460 0.75867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.01 12.77 55.43 0.71 -23.30 15 2 C 0.09 2.38 5.39 -17.82 -0.10 2.28 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.53 -14.37 8.70 -34.44 -0.30 -14.67 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.26 6.10 2.56 -70.02 -0.18 5.92 15 10 H 0.06 1.50 7.95 -51.93 -0.41 1.09 15 11 N -0.81 -17.47 8.01 -6.65 -0.05 -17.52 15 12 C -0.10 -2.03 5.02 -104.57 -0.53 -2.56 15 13 C -0.09 -1.42 9.24 -39.57 -0.37 -1.79 15 14 C -0.15 -2.20 10.02 -39.53 -0.40 -2.59 15 15 C 0.07 1.15 7.31 -39.31 -0.29 0.87 15 16 F -0.14 -2.14 17.11 2.25 0.04 -2.10 15 17 C 0.03 0.53 6.72 -39.14 -0.26 0.27 15 18 O -0.48 -7.60 13.23 -19.79 -0.26 -7.87 15 19 C 0.11 2.16 7.24 -39.31 -0.28 1.88 15 20 F -0.12 -2.52 16.51 2.25 0.04 -2.48 15 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 22 H 0.30 5.65 9.06 -39.29 -0.36 5.29 15 23 H 0.32 6.42 7.28 -39.29 -0.29 6.14 15 24 H 0.14 2.04 6.24 -52.49 -0.33 1.72 15 25 H 0.14 1.60 8.06 -52.48 -0.42 1.17 15 26 H 0.39 4.04 9.06 45.56 0.41 4.46 15 LS Contribution 244.38 15.07 3.68 3.68 Total: -1.00 -30.38 244.38 -4.50 -34.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -0.93 Total: 8.93 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.70 Total: -10.38 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.65 Total: -40.82 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.26 Total: -7.87 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.08 Total: -4.58 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.38 -4.50 -34.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.144 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds