Wall clock time and date at job start Mon Mar 30 2020 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47067 * 240.00466 * 3 2 1 5 5 H 1.48500 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46938 * 120.00234 * 3 2 1 7 7 C 1.37878 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00424 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47077 * 59.99821 * 9 7 2 11 11 N 1.46907 * 109.46647 * 300.00230 * 9 7 2 12 12 C 1.50698 * 109.47348 * 180.02562 * 9 7 2 13 13 C 1.38276 * 119.96526 * 99.99915 * 12 9 7 14 14 C 1.38231 * 120.13379 * 179.97438 * 13 12 9 15 15 C 1.38390 * 120.07203 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.03523 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.93193 * 0.02562 * 15 14 13 18 18 O 1.36015 * 120.06744 * 179.97438 * 17 15 14 19 19 C 1.38355 * 119.96130 * 280.29424 * 12 9 7 20 20 F 1.35093 * 120.03899 * 0.02562 * 19 12 9 21 21 H 0.96993 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99635 * 176.04365 * 11 9 7 23 23 H 1.00896 * 111.00117 * 299.99162 * 11 9 7 24 24 H 1.07992 * 119.92910 * 0.02562 * 13 12 9 25 25 H 1.08006 * 119.96122 * 180.02562 * 14 13 12 26 26 H 0.96701 * 113.99784 * 90.00803 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1993 12 6 2.2304 -3.6446 -0.0005 13 6 2.5211 -4.3047 1.1792 14 6 3.4184 -5.3562 1.1831 15 6 4.0291 -5.7511 0.0057 16 9 4.9056 -6.7792 0.0103 17 6 3.7401 -5.0897 -1.1801 18 8 4.3392 -5.4752 -2.3388 19 6 2.8422 -4.0306 -1.1799 20 9 2.5625 -3.3810 -2.3309 21 1 -0.4850 0.8400 0.0004 22 1 -0.1570 -3.4138 1.1908 23 1 0.9653 -2.5260 2.0381 24 1 2.0454 -3.9987 2.0992 25 1 3.6431 -5.8701 2.1061 26 1 3.8509 -6.1515 -2.8278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259970855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:07 Heat of formation + Delta-G solvation = -126.097468 kcal Electronic energy + Delta-G solvation = -15767.713237 eV Core-core repulsion = 12674.777756 eV Total energy + Delta-G solvation = -3092.935481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.00447 -49.88354 -40.46790 -38.43796 -36.02109 -33.60640 -31.23238 -30.14986 -28.05887 -24.93655 -23.91761 -22.17514 -19.58773 -18.92006 -18.60235 -18.44564 -17.23958 -16.74315 -16.55632 -16.30442 -16.23288 -15.76314 -15.38194 -15.29180 -14.42125 -14.21291 -13.91353 -13.43886 -12.88282 -12.71788 -12.56638 -12.53117 -12.07278 -11.69169 -11.35385 -10.57861 -9.81258 -9.53876 -8.99043 -8.01346 -6.23360 -0.12432 -0.03102 1.43443 1.44650 1.51719 2.27224 2.48515 2.63148 3.10773 3.23038 3.47428 3.78426 3.84042 4.11096 4.38665 4.67730 4.72849 4.96484 5.02142 5.10365 5.46190 5.66268 5.71637 6.10957 6.53423 6.59830 7.05668 7.25500 7.49047 9.01656 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.008324 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.478655 B = 3363.113045 C = 3620.996369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.042 0.958 9 C 0.265 3.735 10 H 0.014 0.986 11 N -0.817 5.817 12 C -0.122 4.122 13 C -0.079 4.079 14 C -0.125 4.125 15 C 0.076 3.924 16 F -0.130 7.130 17 C 0.036 3.964 18 O -0.490 6.490 19 C 0.077 3.923 20 F -0.138 7.138 21 H 0.257 0.743 22 H 0.319 0.681 23 H 0.331 0.669 24 H 0.160 0.840 25 H 0.181 0.819 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -11.896 2.215 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.060 0.940 9 C 0.155 3.845 10 H 0.032 0.968 11 N -0.346 5.346 12 C -0.126 4.126 13 C -0.097 4.097 14 C -0.143 4.143 15 C 0.056 3.944 16 F -0.108 7.108 17 C -0.011 4.011 18 O -0.303 6.303 19 C 0.057 3.943 20 F -0.117 7.117 21 H 0.067 0.933 22 H 0.131 0.869 23 H 0.145 0.855 24 H 0.178 0.822 25 H 0.198 0.802 26 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.942 -10.714 2.060 11.977 hybrid contribution 0.616 -0.209 -0.623 0.901 sum 5.558 -10.923 1.437 12.339 Atomic orbital electron populations 1.70190 1.06863 1.26643 1.47364 1.25597 0.95441 1.01595 0.93765 0.85845 0.78600 0.79840 0.78615 1.20525 1.20700 1.19397 1.20987 0.91868 0.90965 1.54728 0.93962 1.17698 0.87463 0.88714 0.90649 0.96845 1.58837 1.28199 1.43695 1.03863 1.21768 0.99842 0.98750 0.92222 1.20983 0.97165 0.94047 0.97548 1.21391 0.96940 0.98322 0.97682 1.17677 0.94079 0.88693 0.93949 1.91486 1.66398 1.55757 1.97187 1.18346 0.97979 0.97211 0.87547 1.84849 1.49831 1.62566 1.33013 1.17940 0.98709 0.94681 0.83003 1.91452 1.92367 1.80269 1.47616 0.93346 0.86878 0.85472 0.82233 0.80207 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.52 12.77 21.45 0.27 -50.24 15 2 C 0.04 2.24 5.39 84.65 0.46 2.69 15 3 Si 0.95 43.78 29.54 68.60 2.03 45.81 15 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 7 C -0.55 -29.90 8.70 25.60 0.22 -29.68 15 8 H 0.04 2.35 7.74 -2.91 -0.02 2.32 15 9 C 0.27 12.81 2.56 43.42 0.11 12.92 15 10 H 0.01 0.77 7.95 -2.39 -0.02 0.75 15 11 N -0.82 -35.12 8.01 -174.95 -1.40 -36.52 15 12 C -0.12 -4.83 5.02 -19.83 -0.10 -4.93 15 13 C -0.08 -2.39 9.24 22.28 0.21 -2.19 15 14 C -0.12 -3.16 10.02 22.30 0.22 -2.93 15 15 C 0.08 2.21 7.31 22.44 0.16 2.37 15 16 F -0.13 -3.58 17.11 44.97 0.77 -2.81 15 17 C 0.04 1.21 6.72 22.55 0.15 1.36 15 18 O -0.49 -14.81 13.23 -93.72 -1.24 -16.05 15 19 C 0.08 3.08 7.24 22.45 0.16 3.24 15 20 F -0.14 -6.22 16.51 44.97 0.74 -5.48 15 21 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 22 H 0.32 11.75 9.06 -89.69 -0.81 10.94 15 23 H 0.33 12.87 7.28 -89.70 -0.65 12.22 15 24 H 0.16 4.14 6.24 -2.91 -0.02 4.13 15 25 H 0.18 3.08 8.06 -2.91 -0.02 3.06 15 26 H 0.41 7.91 9.06 -74.06 -0.67 7.24 15 Total: -1.00 -65.83 244.38 1.90 -63.93 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.87 Total: 18.52 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 1.60 Total: -17.15 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.13 Total: -86.77 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.24 Total: -16.05 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 1.51 Total: -8.29 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.83 1.90 -63.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.168 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds