Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47010 * 111.00351 * 2 1 4 4 C 1.53098 * 109.26275 * 182.39266 * 3 2 1 5 5 O 1.43016 * 109.25403 * 303.14830 * 4 3 2 6 6 C 1.43025 * 113.77757 * 58.64527 * 5 4 3 7 7 C 1.47017 * 111.00011 * 123.63572 * 2 1 3 8 8 H 1.09007 * 109.50469 * 297.58246 * 7 2 1 9 9 C 1.52998 * 109.50655 * 57.66886 * 7 2 1 10 10 C 1.53006 * 109.46885 * 183.47684 * 9 7 2 11 11 H 1.09007 * 109.47035 * 305.38253 * 10 9 7 12 12 C 1.50699 * 109.47124 * 185.38513 * 10 9 7 13 13 H 1.08006 * 119.99968 * 354.07867 * 12 10 9 14 14 C 1.37873 * 120.00042 * 174.08370 * 12 10 9 15 15 N 1.31512 * 120.00020 * 356.55410 * 14 12 10 16 16 Si 1.86804 * 119.99854 * 176.55554 * 14 12 10 17 17 H 1.48499 * 109.47368 * 90.00022 * 16 14 12 18 18 H 1.48499 * 109.47052 * 210.00152 * 16 14 12 19 19 H 1.48502 * 109.47057 * 329.99469 * 16 14 12 20 20 C 1.52997 * 109.47331 * 65.38129 * 10 9 7 21 21 N 1.46904 * 109.46696 * 58.92630 * 20 10 9 22 22 H 1.08999 * 109.47726 * 288.94766 * 1 2 3 23 23 H 1.09000 * 109.47298 * 48.94873 * 1 2 3 24 24 H 1.09002 * 109.47451 * 168.95139 * 1 2 3 25 25 H 1.08999 * 109.50244 * 302.32522 * 3 2 1 26 26 H 1.09000 * 109.50776 * 62.45182 * 3 2 1 27 27 H 1.08997 * 109.50752 * 63.08135 * 4 3 2 28 28 H 1.08996 * 109.50643 * 183.17192 * 4 3 2 29 29 H 1.08994 * 109.54612 * 181.43331 * 6 5 4 30 30 H 1.09004 * 109.46906 * 61.30875 * 6 5 4 31 31 H 1.09002 * 109.47223 * 63.48244 * 9 7 2 32 32 H 1.08994 * 109.47562 * 303.47668 * 9 7 2 33 33 H 0.97000 * 119.99629 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47639 * 178.92312 * 20 10 9 35 35 H 1.08993 * 109.47412 * 298.92879 * 20 10 9 36 36 H 1.00897 * 111.00262 * 56.04259 * 21 20 10 37 37 H 1.00905 * 110.99996 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3724 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0174 0.5574 1.0404 6 6 3.5249 -0.7850 1.0722 7 6 1.9958 -0.7603 1.1427 8 1 1.6821 -0.2847 2.0720 9 6 1.4588 -2.1921 1.0950 10 6 1.9373 -2.9577 2.3303 11 1 3.0236 -2.8972 2.3971 12 6 1.5205 -4.4016 2.2191 13 1 0.8887 -4.7200 1.4031 14 6 1.9457 -5.3162 3.1591 15 7 2.7695 -4.9431 4.1139 16 14 1.3517 -7.0853 3.0763 17 1 2.2856 -7.8826 2.2412 18 1 1.3030 -7.6557 4.4465 19 1 -0.0058 -7.1241 2.4756 20 6 1.3142 -2.3421 3.5848 21 7 -0.1501 -2.4004 3.4832 22 1 -0.3634 0.3337 0.9719 23 1 -0.3634 0.6749 -0.7750 24 1 -0.3634 -1.0086 -0.1969 25 1 1.6134 1.9091 -0.8682 26 1 1.6827 1.8825 0.9109 27 1 3.8385 0.8643 -0.9964 28 1 3.9221 2.3398 -0.0038 29 1 3.9215 -1.2983 1.9480 30 1 3.8391 -1.3088 0.1693 31 1 1.8252 -2.6878 0.1960 32 1 0.3692 -2.1713 1.0800 33 1 3.0683 -5.5866 4.7754 34 1 1.6399 -2.8993 4.4631 35 1 1.6310 -1.3032 3.6755 36 1 -0.4648 -3.3473 3.3335 37 1 -0.5855 -1.9992 4.3003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260059535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -48.446976 kcal Electronic energy + Delta-G solvation = -17113.474052 eV Core-core repulsion = 14504.378116 eV Total energy + Delta-G solvation = -2609.095936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39995 -36.16069 -35.04599 -32.11185 -31.63725 -29.13366 -27.87001 -25.38356 -24.06283 -23.70157 -22.31325 -20.11030 -18.50485 -16.50016 -15.94037 -15.60800 -15.13358 -14.79213 -14.52896 -14.46485 -14.07811 -13.47343 -13.09059 -12.82059 -12.41138 -12.08715 -11.68525 -11.58756 -11.24364 -11.10070 -10.93109 -10.71798 -10.66406 -10.47522 -10.13942 -9.57231 -9.28831 -9.10050 -8.80087 -8.40546 -7.96313 -7.45474 -6.04126 -4.07592 3.27117 3.34784 3.37706 4.14488 4.25941 4.41472 5.14178 5.27444 5.30933 5.38695 5.43016 5.68074 5.77228 5.84330 5.90154 5.90729 5.98281 6.11177 6.26285 6.34596 6.43145 6.67872 6.76149 6.80541 7.13277 7.20059 7.38535 7.45516 7.54363 7.63155 7.80471 7.94097 8.32668 8.47808 8.59442 8.99275 9.56111 11.02946 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.007460 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.163369 B = 3752.632826 C = 3983.336082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.540 5.540 3 C 0.017 3.983 4 C 0.064 3.936 5 O -0.392 6.392 6 C 0.067 3.933 7 C 0.053 3.947 8 H 0.050 0.950 9 C -0.091 4.091 10 C 0.047 3.953 11 H 0.034 0.966 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.069 3.931 21 N -0.847 5.847 22 H 0.028 0.972 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.259 0.741 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.344 0.656 37 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 9.633 -5.442 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.265 5.265 3 C -0.111 4.111 4 C -0.013 4.013 5 O -0.310 6.310 6 C -0.009 4.009 7 C -0.054 4.054 8 H 0.068 0.932 9 C -0.129 4.129 10 C 0.028 3.972 11 H 0.052 0.948 12 C -0.545 4.545 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.061 4.061 21 N -0.375 5.375 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.158 0.842 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.606 9.863 -6.230 11.775 hybrid contribution -0.730 -1.320 1.485 2.117 sum -2.336 8.543 -4.745 10.047 Atomic orbital electron populations 1.22321 0.87227 1.02623 0.99672 1.62277 1.08171 1.12048 1.43997 1.22757 0.96560 0.90988 1.00820 1.22572 0.92372 0.96011 0.90374 1.87955 1.70077 1.24954 1.48047 1.22916 0.92950 0.82182 1.02898 1.22468 0.94929 0.97062 0.90982 0.93235 1.21593 1.01083 0.90473 0.99713 1.18765 0.95779 0.93497 0.89125 0.94836 1.21140 1.30582 0.92733 1.10059 0.92624 1.24996 0.94978 0.98435 0.95760 1.69936 1.32752 1.34633 1.15646 0.86679 0.79331 0.85409 0.77114 1.20717 1.21458 1.19875 1.21775 0.86827 0.96336 1.01211 1.58890 1.08378 1.27072 1.43186 0.95382 0.92612 0.90534 0.90469 0.94566 0.92736 0.89258 0.87594 0.92686 0.93328 0.91198 0.93081 0.93896 0.95554 0.84186 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 8.99 60.06 0.54 0.98 16 2 N -0.54 -8.84 4.80 -234.58 -1.13 -9.97 16 3 C 0.02 0.24 5.64 -3.71 -0.02 0.22 16 4 C 0.06 0.89 7.01 37.21 0.26 1.15 16 5 O -0.39 -6.87 10.82 -35.23 -0.38 -7.25 16 6 C 0.07 1.23 5.94 37.20 0.22 1.46 16 7 C 0.05 0.99 1.89 -67.60 -0.13 0.87 16 8 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 9 C -0.09 -1.88 3.82 -26.73 -0.10 -1.98 16 10 C 0.05 1.13 1.85 -91.77 -0.17 0.96 16 11 H 0.03 0.87 6.33 -51.92 -0.33 0.54 16 12 C -0.51 -13.22 7.35 -34.44 -0.25 -13.47 16 13 H 0.06 1.46 7.75 -52.48 -0.41 1.06 16 14 C 0.06 1.59 5.28 -17.82 -0.09 1.49 16 15 N -0.89 -24.82 11.91 55.43 0.66 -24.16 16 16 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.07 1.57 6.06 -3.82 -0.02 1.55 16 21 N -0.85 -17.14 8.71 -10.37 -0.09 -17.23 16 22 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 23 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 24 H 0.08 1.20 6.63 -51.93 -0.34 0.86 16 25 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 2.07 6.58 -51.93 -0.34 1.73 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.47 5.61 -51.93 -0.29 1.18 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.04 1.10 6.67 -51.93 -0.35 0.75 16 35 H 0.03 0.58 6.55 -51.93 -0.34 0.24 16 36 H 0.34 7.39 7.91 -39.29 -0.31 7.08 16 37 H 0.31 5.56 9.08 -39.29 -0.36 5.20 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -27.61 283.72 -7.36 -34.97 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.91 Total: 10.41 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 0.23 Total: -6.77 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.56 Total: -51.36 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.38 Total: -7.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.61 -7.36 -34.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.482 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds