Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47010 * 111.00351 * 2 1 4 4 C 1.53098 * 109.26275 * 182.39266 * 3 2 1 5 5 O 1.43016 * 109.25403 * 303.14830 * 4 3 2 6 6 C 1.43025 * 113.77757 * 58.64527 * 5 4 3 7 7 C 1.47017 * 111.00011 * 123.63572 * 2 1 3 8 8 H 1.09007 * 109.50469 * 297.58246 * 7 2 1 9 9 C 1.52998 * 109.50655 * 57.66886 * 7 2 1 10 10 C 1.53006 * 109.46885 * 183.47684 * 9 7 2 11 11 H 1.09007 * 109.47035 * 305.38253 * 10 9 7 12 12 C 1.50699 * 109.47124 * 185.38513 * 10 9 7 13 13 H 1.08006 * 119.99968 * 354.07867 * 12 10 9 14 14 C 1.37873 * 120.00042 * 174.08370 * 12 10 9 15 15 N 1.31512 * 120.00020 * 356.55410 * 14 12 10 16 16 Si 1.86804 * 119.99854 * 176.55554 * 14 12 10 17 17 H 1.48499 * 109.47368 * 90.00022 * 16 14 12 18 18 H 1.48499 * 109.47052 * 210.00152 * 16 14 12 19 19 H 1.48502 * 109.47057 * 329.99469 * 16 14 12 20 20 C 1.52997 * 109.47331 * 65.38129 * 10 9 7 21 21 N 1.46904 * 109.46696 * 58.92630 * 20 10 9 22 22 H 1.08999 * 109.47726 * 288.94766 * 1 2 3 23 23 H 1.09000 * 109.47298 * 48.94873 * 1 2 3 24 24 H 1.09002 * 109.47451 * 168.95139 * 1 2 3 25 25 H 1.08999 * 109.50244 * 302.32522 * 3 2 1 26 26 H 1.09000 * 109.50776 * 62.45182 * 3 2 1 27 27 H 1.08997 * 109.50752 * 63.08135 * 4 3 2 28 28 H 1.08996 * 109.50643 * 183.17192 * 4 3 2 29 29 H 1.08994 * 109.54612 * 181.43331 * 6 5 4 30 30 H 1.09004 * 109.46906 * 61.30875 * 6 5 4 31 31 H 1.09002 * 109.47223 * 63.48244 * 9 7 2 32 32 H 1.08994 * 109.47562 * 303.47668 * 9 7 2 33 33 H 0.97000 * 119.99629 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47639 * 178.92312 * 20 10 9 35 35 H 1.08993 * 109.47412 * 298.92879 * 20 10 9 36 36 H 1.00897 * 111.00262 * 56.04259 * 21 20 10 37 37 H 1.00905 * 110.99996 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3724 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0174 0.5574 1.0404 6 6 3.5249 -0.7850 1.0722 7 6 1.9958 -0.7603 1.1427 8 1 1.6821 -0.2847 2.0720 9 6 1.4588 -2.1921 1.0950 10 6 1.9373 -2.9577 2.3303 11 1 3.0236 -2.8972 2.3971 12 6 1.5205 -4.4016 2.2191 13 1 0.8887 -4.7200 1.4031 14 6 1.9457 -5.3162 3.1591 15 7 2.7695 -4.9431 4.1139 16 14 1.3517 -7.0853 3.0763 17 1 2.2856 -7.8826 2.2412 18 1 1.3030 -7.6557 4.4465 19 1 -0.0058 -7.1241 2.4756 20 6 1.3142 -2.3421 3.5848 21 7 -0.1501 -2.4004 3.4832 22 1 -0.3634 0.3337 0.9719 23 1 -0.3634 0.6749 -0.7750 24 1 -0.3634 -1.0086 -0.1969 25 1 1.6134 1.9091 -0.8682 26 1 1.6827 1.8825 0.9109 27 1 3.8385 0.8643 -0.9964 28 1 3.9221 2.3398 -0.0038 29 1 3.9215 -1.2983 1.9480 30 1 3.8391 -1.3088 0.1693 31 1 1.8252 -2.6878 0.1960 32 1 0.3692 -2.1713 1.0800 33 1 3.0683 -5.5866 4.7754 34 1 1.6399 -2.8993 4.4631 35 1 1.6310 -1.3032 3.6755 36 1 -0.4648 -3.3473 3.3335 37 1 -0.5855 -1.9992 4.3003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -69.491435 kcal Electronic energy + Delta-G solvation = -17114.386608 eV Core-core repulsion = 14504.378116 eV Total energy + Delta-G solvation = -2610.008492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76496 -37.82623 -36.49056 -34.01867 -33.23331 -30.58512 -29.35238 -27.08558 -25.90003 -25.02381 -23.76768 -21.60590 -20.19288 -18.33927 -17.26140 -17.16983 -16.79326 -16.46829 -16.10384 -15.80768 -15.55988 -14.86404 -14.70297 -14.49917 -14.04837 -13.44099 -13.15665 -13.14847 -13.03762 -12.75894 -12.65088 -12.37187 -12.17200 -12.03499 -11.64688 -11.23210 -11.11551 -10.76843 -10.52813 -10.39575 -9.28286 -9.22593 -8.09063 -6.18631 1.40838 1.43693 1.52370 2.43763 2.86905 3.00626 3.20767 3.92202 4.04554 4.14071 4.17248 4.19264 4.32730 4.56366 4.67755 4.68749 4.71976 4.73471 4.82007 4.91062 4.98619 5.02295 5.08457 5.11529 5.33083 5.41835 5.64418 5.90243 5.96188 6.05739 6.14364 6.21377 6.40173 6.60653 6.84223 7.03045 7.48183 8.96909 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.007460 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.163369 B = 3752.632826 C = 3983.336082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.056 3.944 5 O -0.407 6.407 6 C 0.073 3.927 7 C 0.066 3.934 8 H 0.032 0.968 9 C -0.074 4.074 10 C 0.047 3.953 11 H 0.005 0.995 12 C -0.515 4.515 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.919 5.919 16 Si 0.946 3.054 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.084 3.916 21 N -0.835 5.835 22 H 0.020 0.980 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.258 0.742 34 H 0.011 0.989 35 H 0.032 0.968 36 H 0.340 0.660 37 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 10.587 -6.630 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.272 5.272 3 C -0.111 4.111 4 C -0.020 4.020 5 O -0.326 6.326 6 C -0.003 4.003 7 C -0.042 4.042 8 H 0.050 0.950 9 C -0.112 4.112 10 C 0.028 3.972 11 H 0.023 0.977 12 C -0.553 4.553 13 H 0.070 0.930 14 C -0.183 4.183 15 N -0.559 5.559 16 Si 0.773 3.227 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.048 4.048 21 N -0.364 5.364 22 H 0.039 0.961 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.153 0.847 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.570 10.837 -7.428 13.388 hybrid contribution -0.430 -1.534 1.814 2.414 sum -2.999 9.303 -5.614 11.272 Atomic orbital electron populations 1.22341 0.86245 1.02748 1.00311 1.62263 1.09115 1.13535 1.42294 1.22881 0.96516 0.89582 1.02084 1.22904 0.92566 0.97094 0.89455 1.87931 1.70467 1.24387 1.49820 1.22680 0.92806 0.83007 1.01851 1.22163 0.94938 0.95840 0.91303 0.94991 1.21341 1.00760 0.91551 0.97575 1.18692 0.94196 0.93269 0.91029 0.97657 1.21395 1.30216 0.93998 1.09737 0.92990 1.25662 0.95113 1.02031 0.95508 1.70065 1.33842 1.35700 1.16311 0.85731 0.79102 0.80978 0.76893 1.20714 1.21482 1.18935 1.21505 0.88126 0.95876 0.99264 1.58808 1.06779 1.26675 1.44143 0.96132 0.89580 0.91662 0.87227 0.94969 0.92102 0.86063 0.89752 0.92786 0.94372 0.91287 0.93278 0.97071 0.95010 0.84706 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 8.99 127.69 1.15 2.01 16 2 N -0.55 -16.87 4.80 -896.09 -4.30 -21.17 16 3 C 0.02 0.43 5.64 86.32 0.49 0.92 16 4 C 0.06 1.42 7.01 72.02 0.50 1.92 16 5 O -0.41 -13.89 10.82 -148.98 -1.61 -15.50 16 6 C 0.07 2.73 5.94 72.01 0.43 3.16 16 7 C 0.07 2.44 1.89 44.92 0.08 2.52 16 8 H 0.03 1.30 6.44 -2.38 -0.02 1.28 16 9 C -0.07 -3.09 3.82 30.60 0.12 -2.97 16 10 C 0.05 2.29 1.85 -11.54 -0.02 2.27 16 11 H 0.01 0.29 6.33 -2.38 -0.02 0.28 16 12 C -0.52 -27.13 7.35 25.60 0.19 -26.94 16 13 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 14 C 0.02 0.83 5.28 84.65 0.45 1.27 16 15 N -0.92 -52.20 11.91 21.45 0.26 -51.95 16 16 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C 0.08 3.85 6.06 86.30 0.52 4.37 16 21 N -0.84 -33.39 8.71 -186.73 -1.63 -35.02 16 22 H 0.02 0.59 8.11 -2.39 -0.02 0.57 16 23 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 24 H 0.06 1.94 6.63 -2.39 -0.02 1.93 16 25 H 0.11 2.07 8.08 -2.39 -0.02 2.05 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 3.46 6.58 -2.39 -0.02 3.44 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 2.87 5.61 -2.39 -0.01 2.86 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.01 0.58 6.67 -2.39 -0.02 0.57 16 35 H 0.03 1.42 6.55 -2.39 -0.02 1.40 16 36 H 0.34 14.40 7.91 -89.70 -0.71 13.69 16 37 H 0.33 11.37 9.08 -89.69 -0.81 10.56 16 Total: -1.00 -58.88 283.72 -1.81 -60.69 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.46 Total: 29.69 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.91 Total: -11.46 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.67 Total: -108.14 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.61 Total: -15.50 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -58.88 -1.81 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.801 kcal (2) G-P(sol) polarization free energy of solvation -58.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds