Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47016 * 110.99700 * 2 1 4 4 C 1.53099 * 109.25541 * 177.60676 * 3 2 1 5 5 O 1.43020 * 109.25781 * 56.84871 * 4 3 2 6 6 C 1.43014 * 113.73703 * 301.32580 * 5 4 3 7 7 C 1.47004 * 111.00050 * 236.36469 * 2 1 3 8 8 H 1.08999 * 109.51053 * 62.45422 * 7 2 1 9 9 C 1.53003 * 109.50841 * 302.32376 * 7 2 1 10 10 C 1.53002 * 109.47262 * 292.79596 * 9 7 2 11 11 H 1.09001 * 109.46562 * 307.85230 * 10 9 7 12 12 C 1.50701 * 109.46993 * 187.85590 * 10 9 7 13 13 H 1.07998 * 119.99691 * 275.02908 * 12 10 9 14 14 C 1.37876 * 120.00132 * 95.03983 * 12 10 9 15 15 N 1.31514 * 120.00017 * 5.23624 * 14 12 10 16 16 Si 1.86798 * 120.00029 * 185.24552 * 14 12 10 17 17 H 1.48496 * 109.47584 * 89.99314 * 16 14 12 18 18 H 1.48500 * 109.47229 * 209.99866 * 16 14 12 19 19 H 1.48507 * 109.46964 * 329.99271 * 16 14 12 20 20 C 1.53001 * 109.47116 * 67.84974 * 10 9 7 21 21 N 1.46903 * 109.46554 * 177.94793 * 20 10 9 22 22 H 1.08991 * 109.47435 * 66.39799 * 1 2 3 23 23 H 1.09007 * 109.47277 * 306.39401 * 1 2 3 24 24 H 1.09002 * 109.46911 * 186.39688 * 1 2 3 25 25 H 1.09000 * 109.50802 * 297.53895 * 3 2 1 26 26 H 1.09000 * 109.50568 * 57.67241 * 3 2 1 27 27 H 1.09005 * 109.50553 * 176.77758 * 4 3 2 28 28 H 1.08997 * 109.50671 * 296.91041 * 4 3 2 29 29 H 1.09001 * 109.50426 * 178.60312 * 6 5 4 30 30 H 1.08998 * 109.51012 * 298.69337 * 6 5 4 31 31 H 1.09003 * 109.47038 * 52.79117 * 9 7 2 32 32 H 1.08996 * 109.47461 * 172.79348 * 9 7 2 33 33 H 0.97006 * 120.00175 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47189 * 297.94645 * 20 10 9 35 35 H 1.09000 * 109.46818 * 57.95508 * 20 10 9 36 36 H 1.00899 * 111.00467 * 56.05209 * 21 20 10 37 37 H 1.00900 * 110.99595 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0604 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 6 1.9958 -0.7602 -1.1426 8 1 1.6827 -0.2843 -2.0719 9 6 1.4590 -2.1921 -1.0948 10 6 2.0472 -2.9171 0.1173 11 1 3.1327 -2.8185 0.1081 12 6 1.6749 -4.3763 0.0593 13 1 0.7248 -4.7071 0.4520 14 6 2.5473 -5.2889 -0.4949 15 7 3.7449 -4.9043 -0.8789 16 14 2.0280 -7.0714 -0.7007 17 1 1.3880 -7.2505 -2.0286 18 1 3.2220 -7.9491 -0.6042 19 1 1.0613 -7.4318 0.3675 20 6 1.4898 -2.2991 1.4012 21 7 2.0164 -3.0269 2.5636 22 1 -0.3634 0.4114 -0.9416 23 1 -0.3634 0.6098 0.8273 24 1 -0.3633 -1.0213 0.1145 25 1 1.6827 1.8826 -0.9110 26 1 1.6133 1.9092 0.8682 27 1 3.9221 2.3399 0.0029 28 1 3.8384 0.8645 0.9965 29 1 3.9222 -1.2984 -1.9464 30 1 3.8392 -1.3086 -0.1680 31 1 0.3723 -2.1702 -1.0129 32 1 1.7442 -2.7177 -2.0061 33 1 4.3585 -5.5463 -1.2692 34 1 1.7901 -1.2530 1.4610 35 1 0.4019 -2.3651 1.3936 36 1 3.0254 -3.0353 2.5583 37 1 1.6630 -2.6372 3.4246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260059542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -31.824656 kcal Electronic energy + Delta-G solvation = -17467.728350 eV Core-core repulsion = 14859.353212 eV Total energy + Delta-G solvation = -2608.375138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57343 -36.17095 -34.59674 -32.10627 -31.81588 -29.03083 -28.04820 -25.30612 -23.80707 -23.68254 -22.23370 -20.08755 -18.63626 -16.56566 -15.89916 -15.75074 -15.03312 -14.64670 -14.54665 -14.33900 -14.09506 -13.38818 -12.89946 -12.76641 -12.36340 -12.17601 -11.82260 -11.42819 -11.24842 -10.94622 -10.90619 -10.74865 -10.46677 -10.16505 -10.06307 -9.86404 -9.28482 -8.87247 -8.54769 -8.22131 -8.08362 -7.07538 -5.83913 -3.79852 3.40818 3.47763 3.53043 4.13253 4.27800 4.60287 5.13715 5.28789 5.33556 5.41812 5.47847 5.65011 5.74452 5.79708 5.84426 5.88890 5.96672 6.10826 6.18366 6.34961 6.52407 6.59482 6.80824 6.91914 7.05964 7.26736 7.34910 7.44856 7.57790 7.61620 8.00111 8.11032 8.38206 8.59544 8.71828 9.26025 9.79985 11.25890 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.008782 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.771148 B = 3187.599944 C = 3435.796119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.014 3.986 4 C 0.066 3.934 5 O -0.395 6.395 6 C 0.069 3.931 7 C 0.051 3.949 8 H 0.031 0.969 9 C -0.099 4.099 10 C 0.037 3.963 11 H 0.061 0.939 12 C -0.474 4.474 13 H 0.049 0.951 14 C 0.059 3.941 15 N -0.903 5.903 16 Si 0.884 3.116 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.276 1.276 20 C 0.059 3.941 21 N -0.838 5.838 22 H 0.019 0.981 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.256 0.744 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.331 0.669 37 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 11.761 1.697 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.114 4.114 4 C -0.012 4.012 5 O -0.314 6.314 6 C -0.007 4.007 7 C -0.057 4.057 8 H 0.049 0.951 9 C -0.137 4.137 10 C 0.019 3.981 11 H 0.079 0.921 12 C -0.513 4.513 13 H 0.067 0.933 14 C -0.141 4.141 15 N -0.543 5.543 16 Si 0.713 3.287 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.071 4.071 21 N -0.365 5.365 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.142 0.858 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.587 10.889 1.581 11.303 hybrid contribution -0.429 0.117 -0.497 0.667 sum -3.016 11.006 1.084 11.463 Atomic orbital electron populations 1.22488 0.87662 1.03256 0.99310 1.62493 1.07732 1.11377 1.42868 1.22811 0.96768 0.91115 1.00738 1.22542 0.92184 0.95897 0.90565 1.87927 1.70218 1.25241 1.48011 1.22925 0.91997 0.81753 1.04062 1.22511 0.96097 0.96992 0.90132 0.95083 1.21868 0.99008 0.90308 1.02561 1.18899 0.97896 0.93526 0.87809 0.92060 1.20984 1.02444 0.91841 1.36028 0.93294 1.24901 0.94911 0.98071 0.96194 1.69900 1.06166 1.34413 1.43816 0.86719 0.77926 0.85949 0.78068 1.21230 1.21649 1.20112 1.22385 0.97461 0.95318 0.91915 1.58581 1.12949 1.61254 1.03694 0.96265 0.92167 0.89795 0.94740 0.90427 0.89397 0.92654 0.88377 0.90621 0.93531 0.91904 0.93423 0.93345 0.94670 0.85778 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.46 60.07 0.51 0.81 16 2 N -0.52 -8.29 1.84 -234.57 -0.43 -8.72 16 3 C 0.01 0.19 5.66 -3.71 -0.02 0.17 16 4 C 0.07 0.92 7.01 37.21 0.26 1.19 16 5 O -0.40 -6.95 10.83 -35.23 -0.38 -7.33 16 6 C 0.07 1.30 5.85 37.21 0.22 1.52 16 7 C 0.05 0.92 2.28 -67.60 -0.15 0.77 16 8 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 9 C -0.10 -2.08 4.47 -26.73 -0.12 -2.20 16 10 C 0.04 0.88 1.80 -91.77 -0.17 0.71 16 11 H 0.06 1.59 4.89 -51.93 -0.25 1.34 16 12 C -0.47 -12.92 7.84 -34.44 -0.27 -13.19 16 13 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 14 C 0.06 1.63 5.45 -17.82 -0.10 1.54 16 15 N -0.90 -25.84 12.77 55.43 0.71 -25.13 16 16 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.06 1.23 4.86 -3.82 -0.02 1.21 16 21 N -0.84 -17.19 9.14 -10.37 -0.09 -17.28 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.08 1.33 4.75 -51.93 -0.25 1.09 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 30 H 0.08 1.58 5.97 -51.93 -0.31 1.27 16 31 H 0.05 0.95 6.04 -51.93 -0.31 0.63 16 32 H 0.06 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.05 0.94 5.31 -51.93 -0.28 0.67 16 35 H 0.03 0.75 7.02 -51.93 -0.36 0.38 16 36 H 0.33 6.82 8.99 -39.29 -0.35 6.47 16 37 H 0.31 5.38 9.08 -39.29 -0.36 5.03 16 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -29.08 280.50 -6.67 -35.75 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.82 Total: 9.01 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 0.14 Total: -7.46 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.18 Total: -51.13 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.38 Total: -7.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.08 -6.67 -35.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.927 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds