Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47016 * 110.99700 * 2 1 4 4 C 1.53099 * 109.25541 * 177.60676 * 3 2 1 5 5 O 1.43020 * 109.25781 * 56.84871 * 4 3 2 6 6 C 1.43014 * 113.73703 * 301.32580 * 5 4 3 7 7 C 1.47004 * 111.00050 * 236.36469 * 2 1 3 8 8 H 1.08999 * 109.51053 * 62.45422 * 7 2 1 9 9 C 1.53003 * 109.50841 * 302.32376 * 7 2 1 10 10 C 1.53002 * 109.47262 * 292.79596 * 9 7 2 11 11 H 1.09001 * 109.46562 * 307.85230 * 10 9 7 12 12 C 1.50701 * 109.46993 * 187.85590 * 10 9 7 13 13 H 1.07998 * 119.99691 * 275.02908 * 12 10 9 14 14 C 1.37876 * 120.00132 * 95.03983 * 12 10 9 15 15 N 1.31514 * 120.00017 * 5.23624 * 14 12 10 16 16 Si 1.86798 * 120.00029 * 185.24552 * 14 12 10 17 17 H 1.48496 * 109.47584 * 89.99314 * 16 14 12 18 18 H 1.48500 * 109.47229 * 209.99866 * 16 14 12 19 19 H 1.48507 * 109.46964 * 329.99271 * 16 14 12 20 20 C 1.53001 * 109.47116 * 67.84974 * 10 9 7 21 21 N 1.46903 * 109.46554 * 177.94793 * 20 10 9 22 22 H 1.08991 * 109.47435 * 66.39799 * 1 2 3 23 23 H 1.09007 * 109.47277 * 306.39401 * 1 2 3 24 24 H 1.09002 * 109.46911 * 186.39688 * 1 2 3 25 25 H 1.09000 * 109.50802 * 297.53895 * 3 2 1 26 26 H 1.09000 * 109.50568 * 57.67241 * 3 2 1 27 27 H 1.09005 * 109.50553 * 176.77758 * 4 3 2 28 28 H 1.08997 * 109.50671 * 296.91041 * 4 3 2 29 29 H 1.09001 * 109.50426 * 178.60312 * 6 5 4 30 30 H 1.08998 * 109.51012 * 298.69337 * 6 5 4 31 31 H 1.09003 * 109.47038 * 52.79117 * 9 7 2 32 32 H 1.08996 * 109.47461 * 172.79348 * 9 7 2 33 33 H 0.97006 * 120.00175 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47189 * 297.94645 * 20 10 9 35 35 H 1.09000 * 109.46818 * 57.95508 * 20 10 9 36 36 H 1.00899 * 111.00467 * 56.05209 * 21 20 10 37 37 H 1.00900 * 110.99595 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0604 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 6 1.9958 -0.7602 -1.1426 8 1 1.6827 -0.2843 -2.0719 9 6 1.4590 -2.1921 -1.0948 10 6 2.0472 -2.9171 0.1173 11 1 3.1327 -2.8185 0.1081 12 6 1.6749 -4.3763 0.0593 13 1 0.7248 -4.7071 0.4520 14 6 2.5473 -5.2889 -0.4949 15 7 3.7449 -4.9043 -0.8789 16 14 2.0280 -7.0714 -0.7007 17 1 1.3880 -7.2505 -2.0286 18 1 3.2220 -7.9491 -0.6042 19 1 1.0613 -7.4318 0.3675 20 6 1.4898 -2.2991 1.4012 21 7 2.0164 -3.0269 2.5636 22 1 -0.3634 0.4114 -0.9416 23 1 -0.3634 0.6098 0.8273 24 1 -0.3633 -1.0213 0.1145 25 1 1.6827 1.8826 -0.9110 26 1 1.6133 1.9092 0.8682 27 1 3.9221 2.3399 0.0029 28 1 3.8384 0.8645 0.9965 29 1 3.9222 -1.2984 -1.9464 30 1 3.8392 -1.3086 -0.1680 31 1 0.3723 -2.1702 -1.0129 32 1 1.7442 -2.7177 -2.0061 33 1 4.3585 -5.5463 -1.2692 34 1 1.7901 -1.2530 1.4610 35 1 0.4019 -2.3651 1.3936 36 1 3.0254 -3.0353 2.5583 37 1 1.6630 -2.6372 3.4246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -52.637084 kcal Electronic energy + Delta-G solvation = -17468.630845 eV Core-core repulsion = 14859.353212 eV Total energy + Delta-G solvation = -2609.277633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.94303 -37.69891 -36.11515 -34.00651 -33.43045 -30.47079 -29.50885 -27.04282 -25.59482 -25.01220 -23.60375 -21.65933 -20.24023 -18.49839 -17.26124 -17.11603 -16.57359 -16.38000 -15.97411 -15.92373 -15.61395 -14.67131 -14.58781 -14.40247 -14.01311 -13.57928 -13.18221 -12.98435 -12.75583 -12.66334 -12.60881 -12.44346 -12.15508 -12.04504 -11.54495 -11.41812 -10.92296 -10.74434 -10.45369 -10.14821 -9.46307 -8.63175 -7.96182 -5.97564 1.41944 1.44298 1.53448 2.53308 2.87131 3.00789 3.32815 3.90021 4.04402 4.12250 4.20447 4.26525 4.34303 4.55943 4.63601 4.68539 4.71252 4.73933 4.85161 4.94034 5.02210 5.11862 5.14838 5.23421 5.38163 5.59371 5.75823 5.92701 6.05254 6.10314 6.15057 6.24631 6.55044 6.81238 7.07172 7.17956 7.64069 9.11246 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.008782 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.771148 B = 3187.599944 C = 3435.796119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.530 5.530 3 C 0.017 3.983 4 C 0.057 3.943 5 O -0.407 6.407 6 C 0.079 3.921 7 C 0.064 3.936 8 H 0.035 0.965 9 C -0.089 4.089 10 C 0.039 3.961 11 H 0.036 0.964 12 C -0.482 4.482 13 H 0.034 0.966 14 C 0.012 3.988 15 N -0.927 5.927 16 Si 0.937 3.063 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.073 3.927 21 N -0.853 5.853 22 H 0.027 0.973 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.329 0.671 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 13.350 2.401 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.256 5.256 3 C -0.111 4.111 4 C -0.020 4.020 5 O -0.326 6.326 6 C 0.002 3.998 7 C -0.045 4.045 8 H 0.053 0.947 9 C -0.128 4.128 10 C 0.021 3.979 11 H 0.054 0.946 12 C -0.521 4.521 13 H 0.052 0.948 14 C -0.185 4.185 15 N -0.568 5.568 16 Si 0.765 3.235 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.057 4.057 21 N -0.381 5.381 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.521 12.492 2.301 13.181 hybrid contribution -0.160 -0.309 -0.663 0.748 sum -3.681 12.183 1.638 12.832 Atomic orbital electron populations 1.22496 0.86459 1.02739 1.00869 1.62376 1.08862 1.12934 1.41393 1.22894 0.96132 0.89694 1.02376 1.22869 0.92930 0.96884 0.89286 1.87909 1.70674 1.24392 1.49595 1.22613 0.92538 0.82531 1.02106 1.22189 0.95375 0.95453 0.91456 0.94693 1.21610 0.99249 0.91950 0.99976 1.18821 0.96589 0.92230 0.90295 0.94590 1.21255 1.01563 0.93985 1.35268 0.94809 1.25507 0.95106 1.01363 0.96503 1.70013 1.06845 1.35220 1.44770 0.85886 0.77433 0.82195 0.77998 1.20657 1.21546 1.20187 1.22217 0.96879 0.96056 0.90594 1.58510 1.12948 1.61940 1.04716 0.95444 0.89527 0.91649 0.94209 0.87395 0.86087 0.92979 0.90139 0.92909 0.92852 0.94900 0.93668 0.91422 0.95010 0.85988 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 8.46 127.69 1.08 1.65 16 2 N -0.53 -15.65 1.84 -896.06 -1.64 -17.30 16 3 C 0.02 0.40 5.66 86.31 0.49 0.89 16 4 C 0.06 1.45 7.01 72.02 0.50 1.95 16 5 O -0.41 -13.83 10.83 -148.98 -1.61 -15.45 16 6 C 0.08 3.01 5.85 72.02 0.42 3.43 16 7 C 0.06 2.28 2.28 44.93 0.10 2.38 16 8 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 9 C -0.09 -3.79 4.47 30.60 0.14 -3.65 16 10 C 0.04 1.88 1.80 -11.54 -0.02 1.86 16 11 H 0.04 1.92 4.89 -2.39 -0.01 1.91 16 12 C -0.48 -26.59 7.84 25.60 0.20 -26.39 16 13 H 0.03 1.93 7.82 -2.91 -0.02 1.91 16 14 C 0.01 0.66 5.45 84.65 0.46 1.13 16 15 N -0.93 -54.24 12.77 21.45 0.27 -53.96 16 16 Si 0.94 45.55 29.54 68.60 2.03 47.58 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 18 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 C 0.07 2.95 4.86 86.30 0.42 3.37 16 21 N -0.85 -34.24 9.14 -186.71 -1.71 -35.94 16 22 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.09 1.80 8.10 -2.38 -0.02 1.78 16 24 H 0.06 1.95 4.75 -2.39 -0.01 1.94 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.11 1.96 8.12 -2.39 -0.02 1.95 16 27 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.05 2.25 5.97 -2.39 -0.01 2.24 16 31 H 0.05 2.17 6.04 -2.39 -0.01 2.15 16 32 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 34 H 0.07 2.51 5.31 -2.39 -0.01 2.50 16 35 H 0.03 1.31 7.02 -2.39 -0.02 1.29 16 36 H 0.33 13.47 8.99 -89.69 -0.81 12.67 16 37 H 0.33 10.89 9.08 -89.69 -0.81 10.08 16 Total: -1.00 -62.28 280.50 0.58 -61.70 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.55 Total: 26.76 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.79 Total: -13.38 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.08 Total: -107.21 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.61 Total: -15.45 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -62.28 0.58 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.062 kcal (2) G-P(sol) polarization free energy of solvation -62.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds