Wall clock time and date at job start Mon Mar 30 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47009 * 111.00239 * 2 1 4 4 C 1.53102 * 109.25805 * 182.38937 * 3 2 1 5 5 O 1.43010 * 109.25759 * 303.15179 * 4 3 2 6 6 C 1.43020 * 113.74119 * 58.66848 * 5 4 3 7 7 C 1.47018 * 110.99590 * 123.63584 * 2 1 3 8 8 H 1.09001 * 109.50248 * 297.58594 * 7 2 1 9 9 C 1.52996 * 109.50603 * 57.66844 * 7 2 1 10 10 C 1.53005 * 109.46900 * 186.12636 * 9 7 2 11 11 H 1.08994 * 109.47261 * 304.79943 * 10 9 7 12 12 C 1.50699 * 109.46914 * 64.80574 * 10 9 7 13 13 H 1.08004 * 119.99994 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99911 * 180.02562 * 12 10 9 15 15 N 1.31515 * 119.99873 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99797 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47321 * 59.99791 * 16 14 12 18 18 H 1.48502 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47000 * 299.99503 * 16 14 12 20 20 C 1.53006 * 109.47009 * 184.79791 * 10 9 7 21 21 N 1.46907 * 109.46481 * 64.82365 * 20 10 9 22 22 H 1.09003 * 109.47023 * 289.25952 * 1 2 3 23 23 H 1.09004 * 109.47042 * 49.24964 * 1 2 3 24 24 H 1.08996 * 109.47875 * 169.25451 * 1 2 3 25 25 H 1.09001 * 109.50544 * 302.32591 * 3 2 1 26 26 H 1.09006 * 109.50718 * 62.45392 * 3 2 1 27 27 H 1.08997 * 109.50244 * 63.08649 * 4 3 2 28 28 H 1.09000 * 109.50417 * 183.17107 * 4 3 2 29 29 H 1.08998 * 109.51176 * 181.39188 * 6 5 4 30 30 H 1.09002 * 109.50625 * 61.26014 * 6 5 4 31 31 H 1.08999 * 109.47419 * 306.13012 * 9 7 2 32 32 H 1.09001 * 109.47110 * 66.13159 * 9 7 2 33 33 H 0.96995 * 119.99606 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47242 * 184.81774 * 20 10 9 35 35 H 1.08998 * 109.47381 * 304.82747 * 20 10 9 36 36 H 1.00907 * 110.99700 * 179.76569 * 21 20 10 37 37 H 1.00898 * 111.00173 * 303.71632 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5248 -0.7851 1.0711 7 6 1.9958 -0.7603 1.1428 8 1 1.6820 -0.2847 2.0720 9 6 1.4588 -2.1921 1.0950 10 6 1.8819 -2.9380 2.3621 11 1 2.9653 -2.8865 2.4694 12 6 1.2274 -2.3021 3.5614 13 1 0.5753 -1.4509 3.4328 14 6 1.4620 -2.8065 4.8231 15 7 2.2565 -3.8428 4.9797 16 14 0.6514 -2.0178 6.3097 17 1 -0.8248 -2.0880 6.1641 18 1 1.0619 -2.7418 7.5396 19 1 1.0722 -0.5971 6.4074 20 6 1.4483 -4.4019 2.2609 21 7 2.1741 -5.0525 1.1618 22 1 -0.3633 0.3390 0.9702 23 1 -0.3633 0.6708 -0.7785 24 1 -0.3635 -1.0096 -0.1916 25 1 1.6134 1.9091 -0.8682 26 1 1.6828 1.8825 0.9110 27 1 3.8385 0.8642 -0.9963 28 1 3.9222 2.3397 -0.0037 29 1 3.9220 -1.2987 1.9466 30 1 3.8383 -1.3086 0.1678 31 1 0.3708 -2.1702 1.0323 32 1 1.8628 -2.7027 0.2208 33 1 2.4212 -4.1978 5.8672 34 1 1.6728 -4.9128 3.1972 35 1 0.3767 -4.4510 2.0680 36 1 1.9079 -6.0222 1.0768 37 1 2.0306 -4.5607 0.2926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260059551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:49 Heat of formation + Delta-G solvation = -46.361911 kcal Electronic energy + Delta-G solvation = -17118.626765 eV Core-core repulsion = 14509.621244 eV Total energy + Delta-G solvation = -2609.005521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35474 -36.13249 -35.04729 -32.16729 -31.90932 -29.14509 -27.91597 -25.45107 -23.87413 -23.72294 -22.15554 -19.74712 -19.08464 -16.58080 -15.98673 -15.70088 -15.00676 -14.90378 -14.45126 -14.30428 -14.10681 -13.49306 -13.40258 -12.68719 -12.34749 -12.11692 -11.88023 -11.68251 -11.37581 -10.96548 -10.78821 -10.73389 -10.47686 -10.43059 -10.20596 -9.70759 -9.19344 -9.08800 -8.86129 -8.40586 -7.97718 -7.59807 -5.99240 -4.06737 3.30370 3.35734 3.38025 4.16331 4.31187 4.42447 5.16032 5.27580 5.32352 5.40285 5.44096 5.68382 5.74505 5.79435 5.83919 5.92195 5.96249 6.10559 6.14628 6.37776 6.48949 6.54530 6.74375 6.83502 6.95728 7.07659 7.34309 7.44137 7.58927 7.68692 7.87970 7.98164 8.24981 8.40663 8.48584 8.97676 9.58173 11.05458 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.009359 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.695861 B = 2991.092010 C = 3431.158589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.018 3.982 4 C 0.064 3.936 5 O -0.389 6.389 6 C 0.073 3.927 7 C 0.058 3.942 8 H 0.063 0.937 9 C -0.098 4.098 10 C 0.052 3.948 11 H 0.039 0.961 12 C -0.514 4.514 13 H 0.052 0.948 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.064 3.936 21 N -0.854 5.854 22 H 0.027 0.973 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.261 0.739 34 H 0.104 0.896 35 H -0.007 1.007 36 H 0.319 0.681 37 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 6.072 -9.420 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.111 4.111 4 C -0.013 4.013 5 O -0.307 6.307 6 C -0.003 4.003 7 C -0.049 4.049 8 H 0.081 0.919 9 C -0.136 4.136 10 C 0.033 3.967 11 H 0.057 0.943 12 C -0.553 4.553 13 H 0.070 0.930 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.066 4.066 21 N -0.382 5.382 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.011 0.989 36 H 0.129 0.871 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.346 5.973 -9.126 10.912 hybrid contribution -2.063 0.571 0.998 2.362 sum -2.409 6.544 -8.127 10.709 Atomic orbital electron populations 1.22341 0.87701 1.02314 0.99797 1.62316 1.07817 1.12364 1.44342 1.22753 0.96667 0.90799 1.00881 1.22561 0.92279 0.96109 0.90381 1.87983 1.69916 1.24955 1.47878 1.22839 0.92681 0.82172 1.02650 1.22336 0.95244 0.95994 0.91369 0.91868 1.21684 0.99412 0.92798 0.99690 1.18726 0.97560 0.89997 0.90465 0.94331 1.21100 1.28655 1.14393 0.91123 0.92957 1.24975 0.95053 0.94992 0.98806 1.69868 1.36281 1.23365 1.22696 0.86748 0.79733 0.79612 0.82457 1.20466 1.21259 1.20294 1.22125 0.91729 0.98410 0.94356 1.59024 1.65339 1.05238 1.08587 0.95482 0.92378 0.90914 0.90534 0.94358 0.92856 0.89265 0.87205 0.93146 0.93152 0.93635 0.92896 0.87815 0.98893 0.87076 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.00 60.07 0.54 0.94 16 2 N -0.54 -8.97 4.80 -234.57 -1.12 -10.09 16 3 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 4 C 0.06 0.92 7.01 37.21 0.26 1.18 16 5 O -0.39 -7.14 10.83 -35.23 -0.38 -7.52 16 6 C 0.07 1.39 6.00 37.21 0.22 1.61 16 7 C 0.06 1.12 1.92 -67.60 -0.13 0.99 16 8 H 0.06 1.41 6.78 -51.93 -0.35 1.05 16 9 C -0.10 -1.97 3.84 -26.73 -0.10 -2.07 16 10 C 0.05 1.24 1.87 -91.77 -0.17 1.07 16 11 H 0.04 1.02 6.48 -51.93 -0.34 0.69 16 12 C -0.51 -13.60 7.77 -34.44 -0.27 -13.86 16 13 H 0.05 1.38 7.07 -52.48 -0.37 1.01 16 14 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 15 N -0.88 -24.90 11.30 55.43 0.63 -24.27 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.06 1.48 6.08 -3.82 -0.02 1.46 16 21 N -0.85 -16.85 9.62 -10.36 -0.10 -16.95 16 22 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 23 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 24 H 0.07 1.09 6.55 -51.93 -0.34 0.75 16 25 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.11 2.30 6.67 -51.93 -0.35 1.95 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 1.02 6.20 -51.93 -0.32 0.70 16 32 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.10 2.77 5.96 -51.93 -0.31 2.46 16 35 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 36 H 0.32 5.55 9.08 -39.29 -0.36 5.19 16 37 H 0.32 5.75 7.15 -39.29 -0.28 5.47 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -28.37 283.47 -7.37 -35.74 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.86 Total: 9.51 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.21 Total: -6.82 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.60 Total: -51.32 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.38 Total: -7.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.37 -7.37 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.621 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds