Wall clock time and date at job start Mon Mar 30 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47009 * 111.00239 * 2 1 4 4 C 1.53102 * 109.25805 * 182.38937 * 3 2 1 5 5 O 1.43010 * 109.25759 * 303.15179 * 4 3 2 6 6 C 1.43020 * 113.74119 * 58.66848 * 5 4 3 7 7 C 1.47018 * 110.99590 * 123.63584 * 2 1 3 8 8 H 1.09001 * 109.50248 * 297.58594 * 7 2 1 9 9 C 1.52996 * 109.50603 * 57.66844 * 7 2 1 10 10 C 1.53005 * 109.46900 * 186.12636 * 9 7 2 11 11 H 1.08994 * 109.47261 * 304.79943 * 10 9 7 12 12 C 1.50699 * 109.46914 * 64.80574 * 10 9 7 13 13 H 1.08004 * 119.99994 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99911 * 180.02562 * 12 10 9 15 15 N 1.31515 * 119.99873 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99797 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47321 * 59.99791 * 16 14 12 18 18 H 1.48502 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47000 * 299.99503 * 16 14 12 20 20 C 1.53006 * 109.47009 * 184.79791 * 10 9 7 21 21 N 1.46907 * 109.46481 * 64.82365 * 20 10 9 22 22 H 1.09003 * 109.47023 * 289.25952 * 1 2 3 23 23 H 1.09004 * 109.47042 * 49.24964 * 1 2 3 24 24 H 1.08996 * 109.47875 * 169.25451 * 1 2 3 25 25 H 1.09001 * 109.50544 * 302.32591 * 3 2 1 26 26 H 1.09006 * 109.50718 * 62.45392 * 3 2 1 27 27 H 1.08997 * 109.50244 * 63.08649 * 4 3 2 28 28 H 1.09000 * 109.50417 * 183.17107 * 4 3 2 29 29 H 1.08998 * 109.51176 * 181.39188 * 6 5 4 30 30 H 1.09002 * 109.50625 * 61.26014 * 6 5 4 31 31 H 1.08999 * 109.47419 * 306.13012 * 9 7 2 32 32 H 1.09001 * 109.47110 * 66.13159 * 9 7 2 33 33 H 0.96995 * 119.99606 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47242 * 184.81774 * 20 10 9 35 35 H 1.08998 * 109.47381 * 304.82747 * 20 10 9 36 36 H 1.00907 * 110.99700 * 179.76569 * 21 20 10 37 37 H 1.00898 * 111.00173 * 303.71632 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5248 -0.7851 1.0711 7 6 1.9958 -0.7603 1.1428 8 1 1.6820 -0.2847 2.0720 9 6 1.4588 -2.1921 1.0950 10 6 1.8819 -2.9380 2.3621 11 1 2.9653 -2.8865 2.4694 12 6 1.2274 -2.3021 3.5614 13 1 0.5753 -1.4509 3.4328 14 6 1.4620 -2.8065 4.8231 15 7 2.2565 -3.8428 4.9797 16 14 0.6514 -2.0178 6.3097 17 1 -0.8248 -2.0880 6.1641 18 1 1.0619 -2.7418 7.5396 19 1 1.0722 -0.5971 6.4074 20 6 1.4483 -4.4019 2.2609 21 7 2.1741 -5.0525 1.1618 22 1 -0.3633 0.3390 0.9702 23 1 -0.3633 0.6708 -0.7785 24 1 -0.3635 -1.0096 -0.1916 25 1 1.6134 1.9091 -0.8682 26 1 1.6828 1.8825 0.9110 27 1 3.8385 0.8642 -0.9963 28 1 3.9222 2.3397 -0.0037 29 1 3.9220 -1.2987 1.9466 30 1 3.8383 -1.3086 0.1678 31 1 0.3708 -2.1702 1.0323 32 1 1.8628 -2.7027 0.2208 33 1 2.4212 -4.1978 5.8672 34 1 1.6728 -4.9128 3.1972 35 1 0.3767 -4.4510 2.0680 36 1 1.9079 -6.0222 1.0768 37 1 2.0306 -4.5607 0.2926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:49 Heat of formation + Delta-G solvation = -68.480311 kcal Electronic energy + Delta-G solvation = -17119.585891 eV Core-core repulsion = 14509.621244 eV Total energy + Delta-G solvation = -2609.964647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74612 -37.80962 -36.51342 -34.15498 -33.44208 -30.61841 -29.40074 -27.15515 -25.73835 -25.05795 -23.58650 -21.28418 -20.83583 -18.48955 -17.37420 -17.14815 -16.80417 -16.39287 -15.97979 -15.84126 -15.60016 -15.18085 -14.74971 -14.19342 -14.18075 -13.62530 -13.42528 -13.11895 -12.91845 -12.76364 -12.54893 -12.32529 -12.13870 -12.03158 -11.86680 -11.30421 -11.01082 -10.81646 -10.54973 -10.39964 -9.34701 -9.29696 -8.07114 -6.20160 1.38796 1.40046 1.46835 2.42213 2.85732 3.00466 3.19336 3.90939 4.02599 4.10634 4.13145 4.24404 4.32225 4.50607 4.60398 4.63275 4.68304 4.70977 4.78951 4.90717 4.94501 4.99323 5.10253 5.13875 5.19097 5.32260 5.60064 5.94621 5.97409 6.05069 6.13033 6.24825 6.35087 6.60858 6.83182 6.97278 7.47218 8.96193 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.009359 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.695861 B = 2991.092010 C = 3431.158589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.057 3.943 5 O -0.410 6.410 6 C 0.080 3.920 7 C 0.068 3.932 8 H 0.026 0.974 9 C -0.083 4.083 10 C 0.054 3.946 11 H 0.008 0.992 12 C -0.523 4.523 13 H 0.046 0.954 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.277 1.277 20 C 0.075 3.925 21 N -0.852 5.852 22 H 0.012 0.988 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.260 0.740 34 H 0.070 0.930 35 H -0.008 1.008 36 H 0.336 0.664 37 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 7.185 -11.080 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.020 4.020 5 O -0.329 6.329 6 C 0.004 3.996 7 C -0.041 4.041 8 H 0.044 0.956 9 C -0.121 4.121 10 C 0.034 3.966 11 H 0.026 0.974 12 C -0.562 4.562 13 H 0.064 0.936 14 C -0.183 4.183 15 N -0.549 5.549 16 Si 0.769 3.231 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.203 1.203 20 C -0.056 4.056 21 N -0.382 5.382 22 H 0.031 0.969 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.010 0.990 36 H 0.148 0.852 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.989 7.092 -10.810 12.967 hybrid contribution -1.847 0.272 1.444 2.360 sum -2.836 7.364 -9.366 12.247 Atomic orbital electron populations 1.22416 0.86636 1.03026 1.00145 1.62333 1.08791 1.13515 1.42075 1.22897 0.96788 0.89631 1.01899 1.22897 0.92344 0.97119 0.89591 1.87947 1.70380 1.24640 1.49931 1.22593 0.92367 0.82919 1.01768 1.22055 0.95465 0.95528 0.91030 0.95584 1.21471 0.99347 0.93198 0.98122 1.18615 0.95406 0.90935 0.91614 0.97388 1.21390 1.28313 1.14102 0.92350 0.93552 1.25656 0.95739 0.95539 1.01341 1.70004 1.37480 1.24470 1.22988 0.85854 0.79124 0.78591 0.79541 1.19711 1.20960 1.20297 1.21772 0.91815 0.97852 0.94171 1.58839 1.64715 1.06291 1.08350 0.96934 0.89127 0.91148 0.86947 0.95567 0.91555 0.86317 0.90260 0.91961 0.93110 0.92132 0.93109 0.91184 0.98992 0.85241 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.00 127.69 1.15 1.86 16 2 N -0.54 -16.78 4.80 -896.05 -4.30 -21.08 16 3 C 0.02 0.41 5.64 86.32 0.49 0.90 16 4 C 0.06 1.48 7.01 72.02 0.50 1.98 16 5 O -0.41 -14.75 10.83 -148.98 -1.61 -16.36 16 6 C 0.08 3.07 6.00 72.01 0.43 3.50 16 7 C 0.07 2.60 1.92 44.92 0.09 2.69 16 8 H 0.03 1.19 6.78 -2.39 -0.02 1.18 16 9 C -0.08 -3.33 3.84 30.59 0.12 -3.21 16 10 C 0.05 2.61 1.87 -11.54 -0.02 2.59 16 11 H 0.01 0.44 6.48 -2.39 -0.02 0.43 16 12 C -0.52 -28.29 7.77 25.60 0.20 -28.09 16 13 H 0.05 2.51 7.07 -2.91 -0.02 2.49 16 14 C 0.02 0.91 5.29 84.66 0.45 1.35 16 15 N -0.91 -52.60 11.30 21.45 0.24 -52.35 16 16 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C 0.07 3.51 6.08 86.30 0.52 4.04 16 21 N -0.85 -32.89 9.62 -186.71 -1.80 -34.68 16 22 H 0.01 0.37 8.11 -2.39 -0.02 0.35 16 23 H 0.09 1.91 8.02 -2.39 -0.02 1.89 16 24 H 0.07 1.97 6.55 -2.39 -0.02 1.95 16 25 H 0.11 2.17 8.08 -2.39 -0.02 2.15 16 26 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 3.48 6.67 -2.39 -0.02 3.46 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.01 6.20 -2.39 -0.01 2.00 16 32 H 0.06 2.22 6.47 -2.39 -0.02 2.20 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.07 3.82 5.96 -2.39 -0.01 3.81 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.34 11.23 9.08 -89.69 -0.81 10.42 16 37 H 0.33 11.43 7.15 -89.70 -0.64 10.79 16 Total: -1.00 -61.81 283.47 -1.90 -63.71 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.39 Total: 27.14 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 3.93 Total: -12.38 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.85 Total: -108.12 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.61 Total: -16.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.81 -1.90 -63.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.775 kcal (2) G-P(sol) polarization free energy of solvation -61.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds