Wall clock time and date at job start Mon Mar 30 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00228 * 2 1 4 4 H 1.48506 * 109.46799 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.47150 * 29.99507 * 3 2 1 6 6 H 1.48493 * 109.47568 * 149.99656 * 3 2 1 7 7 C 1.37879 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99760 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47025 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99842 * 179.97438 * 10 9 7 12 12 O 1.21619 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.47300 * 119.99741 * 180.02562 * 11 10 9 14 14 C 1.41341 * 126.43908 * 0.18059 * 13 11 10 15 15 N 1.30409 * 108.05051 * 180.26762 * 14 13 11 16 16 N 1.39930 * 108.95898 * 359.74218 * 15 14 13 17 17 H 0.96998 * 125.74750 * 180.02562 * 16 15 14 18 18 C 1.34354 * 108.49998 * 359.97438 * 16 15 14 19 19 Cl 1.73599 * 126.31675 * 179.97438 * 18 16 15 20 20 H 0.97000 * 119.99406 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46453 * 60.00150 * 9 7 2 22 22 H 1.09000 * 109.46650 * 299.99998 * 9 7 2 23 23 H 0.97003 * 120.00042 * 0.02562 * 10 9 7 24 24 H 1.08006 * 125.97234 * 0.04698 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 5.3249 -2.8217 0.0009 12 8 6.1153 -1.8973 0.0014 13 6 5.8158 -4.2105 0.0002 14 6 5.0236 -5.3809 -0.0040 15 7 5.8238 -6.4106 0.0026 16 7 7.1477 -5.9574 0.0053 17 1 7.9388 -6.5187 0.0097 18 6 7.1384 -4.6139 -0.0004 19 17 8.5301 -3.5761 0.0006 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6805 -0.8889 23 1 3.3695 -3.3127 0.0002 24 1 3.9441 -5.4164 -0.0080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102802.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:39 Heat of formation + Delta-G solvation = 3.981126 kcal Electronic energy + Delta-G solvation = -13183.723295 eV Core-core repulsion = 10544.684782 eV Total energy + Delta-G solvation = -2639.038513 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.50979 -40.02257 -38.03451 -36.07932 -34.38977 -33.00322 -31.49900 -29.66357 -25.05910 -23.24430 -22.97077 -21.25631 -20.14187 -18.71041 -17.35960 -16.89131 -16.63014 -16.02948 -15.86710 -15.64366 -14.86887 -14.55983 -14.22535 -13.97802 -13.18463 -13.07509 -12.94417 -12.65851 -11.95288 -11.87615 -11.58927 -10.89863 -10.87848 -10.86008 -10.10925 -9.72079 -8.34369 -6.40553 0.12097 0.19691 0.99553 1.37687 1.40046 1.52597 1.84341 2.33274 2.40883 2.54110 3.01620 3.48424 3.83544 3.93772 4.44638 4.88217 5.08768 5.11264 5.32679 5.57198 5.82028 6.13619 6.22050 6.60634 6.90608 7.21419 7.45203 8.80141 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.043352 B = 0.006599 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.725156 B = 4242.265095 C = 4872.843279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.234 3.766 10 N -0.698 5.698 11 C 0.576 3.424 12 O -0.583 6.583 13 C -0.283 4.283 14 C 0.103 3.897 15 N -0.277 5.277 16 N -0.436 5.436 17 H 0.462 0.538 18 C 0.187 3.813 19 Cl 0.032 6.968 20 H 0.271 0.729 21 H 0.015 0.985 22 H 0.014 0.986 23 H 0.408 0.592 24 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -11.665 -0.007 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.111 3.889 10 N -0.347 5.347 11 C 0.364 3.636 12 O -0.465 6.465 13 C -0.299 4.299 14 C -0.084 4.084 15 N -0.099 5.099 16 N -0.148 5.148 17 H 0.312 0.688 18 C 0.025 3.975 19 Cl 0.060 6.940 20 H 0.080 0.920 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.244 0.756 24 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.525 -12.075 0.002 19.668 hybrid contribution 0.189 1.247 -0.018 1.261 sum 15.714 -10.828 -0.016 19.083 Atomic orbital electron populations 1.69987 1.07666 1.28482 1.50954 1.25583 0.95515 1.02619 0.93747 0.85882 0.79359 0.79430 0.79383 1.19103 1.20098 1.18247 1.21305 0.89930 0.94647 1.52246 0.91932 1.19115 0.93286 0.80624 0.95920 1.45734 1.05994 1.09869 1.73082 1.17511 0.82447 0.87466 0.76211 1.90741 1.56110 1.46563 1.53065 1.19928 0.91680 0.94666 1.23647 1.24505 1.01858 0.87148 0.94921 1.77291 0.85835 1.21764 1.25047 1.46307 1.09223 1.02437 1.56796 0.68840 1.22051 0.90874 0.84892 0.99665 1.98468 1.36734 1.62631 1.96157 0.91972 0.96680 0.96800 0.75568 0.75762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.96 21.45 0.30 -54.89 14 2 C 0.03 1.42 5.47 84.65 0.46 1.89 14 3 Si 0.94 43.66 27.47 68.60 1.88 45.54 14 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 14 6 H -0.26 -11.90 6.54 99.48 0.65 -11.25 14 7 C -0.54 -29.43 9.83 25.60 0.25 -29.18 14 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 14 9 C 0.23 11.28 4.50 85.64 0.38 11.67 14 10 N -0.70 -27.50 5.54 -470.22 -2.61 -30.11 14 11 C 0.58 21.86 7.81 86.63 0.68 22.54 14 12 O -0.58 -25.83 15.64 -4.09 -0.06 -25.89 14 13 C -0.28 -8.25 6.13 -20.12 -0.12 -8.37 14 14 C 0.10 2.38 11.50 85.67 0.99 3.36 14 15 N -0.28 -6.09 12.63 -56.26 -0.71 -6.80 14 16 N -0.44 -8.19 7.29 -48.97 -0.36 -8.54 14 17 H 0.46 5.05 8.96 -213.43 -1.91 3.14 14 18 C 0.19 4.62 7.91 84.32 0.67 5.29 14 19 Cl 0.03 0.77 27.93 -2.72 -0.08 0.70 14 20 H 0.27 15.01 8.31 -92.71 -0.77 14.24 14 21 H 0.02 0.77 7.20 -2.39 -0.02 0.76 14 22 H 0.01 0.70 7.57 -2.39 -0.02 0.68 14 23 H 0.41 13.72 7.27 -92.71 -0.67 13.05 14 24 H 0.23 3.84 7.50 -2.91 -0.02 3.81 14 Total: -1.00 -68.22 239.02 0.30 -67.92 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -1.37 Total: 4.89 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 3.31 Total: 7.19 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.37 Total: -100.34 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.70 kcal Total: -68.22 0.30 -67.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102802.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.897 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds