Wall clock time and date at job start Mon Mar 30 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39926 * 125.74766 * 2 1 4 4 C 1.30406 * 108.97715 * 179.77526 * 3 2 1 5 5 C 1.41366 * 108.05226 * 0.38731 * 4 3 2 6 6 C 1.47236 * 126.44376 * 179.87756 * 5 4 3 7 7 O 1.21637 * 120.00234 * 179.68933 * 6 5 4 8 8 N 1.34777 * 119.99871 * 359.68553 * 6 5 4 9 9 C 1.36985 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00059 * 0.02562 * 9 8 6 11 11 C 1.38978 * 119.99891 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99586 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99782 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 90.00127 * 13 11 9 15 15 H 1.48495 * 109.46664 * 209.99980 * 13 11 9 16 16 H 1.48492 * 109.47108 * 330.00011 * 13 11 9 17 17 C 1.34373 * 125.74750 * 180.02562 * 2 1 3 18 18 Cl 1.73605 * 126.32234 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46360 * 269.96912 * 1 2 3 20 20 H 1.08995 * 109.47002 * 29.96674 * 1 2 3 21 21 H 1.08995 * 109.46914 * 149.97184 * 1 2 3 22 22 H 1.07998 * 125.97312 * 180.26171 * 4 3 2 23 23 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 24 24 H 0.97005 * 119.99639 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5311 0.7594 0.0048 5 6 3.5628 -0.6539 -0.0009 6 6 4.7665 -1.5018 -0.0008 7 8 4.6571 -2.7133 -0.0004 8 7 5.9895 -0.9356 -0.0012 9 6 7.1094 -1.7245 -0.0006 10 1 7.0123 -2.8001 -0.0002 11 6 8.3706 -1.1407 -0.0005 12 7 8.4887 0.1682 -0.0004 13 14 9.8978 -2.2164 -0.0003 14 1 10.3025 -2.5014 -1.4004 15 1 11.0006 -1.5102 0.6998 16 1 9.6041 -3.4927 0.6996 17 6 2.2501 -1.0906 -0.0005 18 17 1.7156 -2.7423 -0.0006 19 1 -0.3632 -0.0006 1.0278 20 1 -0.3633 0.8902 -0.5133 21 1 -0.3633 -0.8897 -0.5143 22 1 4.3907 1.4132 0.0101 23 1 6.0768 0.0304 -0.0012 24 1 9.3690 0.5757 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162182.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:31 Heat of formation + Delta-G solvation = 35.762206 kcal Electronic energy + Delta-G solvation = -13383.024695 eV Core-core repulsion = 10745.364313 eV Total energy + Delta-G solvation = -2637.660382 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97106 -37.71118 -36.51547 -33.89853 -33.24714 -31.15648 -29.69024 -27.12837 -24.85547 -22.05897 -20.78211 -19.26619 -18.02228 -17.10666 -15.66087 -15.47561 -14.55364 -14.36136 -13.98096 -13.43500 -13.30340 -12.72946 -12.55416 -12.48767 -11.70086 -11.52690 -11.37261 -11.07648 -10.43641 -10.37326 -10.19630 -9.52007 -9.19485 -8.40558 -8.24176 -7.93670 -6.42791 -3.78115 1.69209 1.70313 2.58987 2.81079 3.23897 3.28477 3.34731 4.18128 4.42631 4.48314 5.04283 5.07267 5.29010 5.34682 5.39483 5.59582 5.60639 6.43364 6.70722 6.76418 7.55548 7.67662 8.08095 8.63437 9.18470 9.56062 10.10109 10.75022 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.047290 B = 0.007183 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.954316 B = 3896.978463 C = 4473.787589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 N -0.286 5.286 4 C 0.079 3.921 5 C -0.226 4.226 6 C 0.507 3.493 7 O -0.587 6.587 8 N -0.550 5.550 9 C -0.292 4.292 10 H 0.106 0.894 11 C 0.021 3.979 12 N -0.897 5.897 13 Si 0.932 3.068 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.155 3.845 18 Cl 0.016 6.984 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.198 0.802 23 H 0.392 0.608 24 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 1.557 -0.039 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.152 5.152 3 N -0.107 5.107 4 C -0.107 4.107 5 C -0.242 4.242 6 C 0.294 3.706 7 O -0.472 6.472 8 N -0.185 5.185 9 C -0.422 4.422 10 H 0.124 0.876 11 C -0.181 4.181 12 N -0.538 5.538 13 Si 0.759 3.241 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.002 4.002 18 Cl 0.044 6.956 19 H 0.096 0.904 20 H 0.112 0.888 21 H 0.106 0.894 22 H 0.214 0.786 23 H 0.226 0.774 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.506 1.699 -0.037 13.613 hybrid contribution 1.232 -0.613 0.000 1.376 sum -12.275 1.086 -0.037 12.323 Atomic orbital electron populations 1.21919 0.74002 1.04750 1.03724 1.48358 1.06835 1.02496 1.57484 1.77187 1.02227 1.05496 1.25836 1.24115 0.95117 0.94150 0.97357 1.20446 0.92881 0.93601 1.17235 1.16678 0.81938 0.87036 0.84991 1.90635 1.86191 1.13496 1.56897 1.41673 1.04019 1.09475 1.63297 1.19758 0.82936 0.92655 1.46853 0.87601 1.25303 0.99357 0.96134 0.97288 1.69613 1.25258 1.09041 1.49889 0.85817 0.80236 0.79611 0.78411 1.20372 1.20916 1.19339 1.21870 0.90752 0.83313 1.04234 1.98404 1.89819 1.10851 1.96542 0.90382 0.88755 0.89433 0.78555 0.77412 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 11.28 59.85 0.68 1.64 14 2 N -0.37 -5.70 3.98 -64.29 -0.26 -5.96 14 3 N -0.29 -4.83 12.49 30.87 0.39 -4.44 14 4 C 0.08 1.41 11.50 -16.97 -0.20 1.22 14 5 C -0.23 -4.67 6.13 -105.01 -0.64 -5.31 14 6 C 0.51 12.63 7.76 -12.60 -0.10 12.53 14 7 O -0.59 -16.17 15.22 5.24 0.08 -16.09 14 8 N -0.55 -14.15 5.27 -12.00 -0.06 -14.22 14 9 C -0.29 -8.12 9.68 -14.98 -0.14 -8.26 14 10 H 0.11 3.06 7.15 -52.49 -0.38 2.69 14 11 C 0.02 0.57 5.50 -17.46 -0.10 0.47 14 12 N -0.90 -24.09 13.05 55.50 0.72 -23.36 14 13 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 14 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 14 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 14 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 14 17 C 0.15 2.82 7.53 -16.40 -0.12 2.70 14 18 Cl 0.02 0.26 27.35 -51.86 -1.42 -1.15 14 19 H 0.08 0.65 8.14 -51.93 -0.42 0.22 14 20 H 0.09 0.77 8.14 -51.93 -0.42 0.35 14 21 H 0.09 0.73 7.77 -51.93 -0.40 0.32 14 22 H 0.20 3.05 7.50 -52.49 -0.39 2.66 14 23 H 0.39 9.51 6.85 -40.82 -0.28 9.23 14 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 14 LS Contribution 241.49 15.07 3.64 3.64 Total: -1.00 -31.90 241.49 -3.99 -35.90 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -1.43 Total: 4.89 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.63 Total: 4.97 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.79 Total: -47.98 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.08 Total: -16.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.42 Total: -1.15 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.90 -3.99 -35.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162182.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.658 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds