Wall clock time and date at job start Mon Mar 30 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39926 * 125.74766 * 2 1 4 4 C 1.30406 * 108.97715 * 179.77526 * 3 2 1 5 5 C 1.41366 * 108.05226 * 0.38731 * 4 3 2 6 6 C 1.47236 * 126.44376 * 179.87756 * 5 4 3 7 7 O 1.21637 * 120.00234 * 179.68933 * 6 5 4 8 8 N 1.34777 * 119.99871 * 359.68553 * 6 5 4 9 9 C 1.36985 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00059 * 0.02562 * 9 8 6 11 11 C 1.38978 * 119.99891 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99586 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99782 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 90.00127 * 13 11 9 15 15 H 1.48495 * 109.46664 * 209.99980 * 13 11 9 16 16 H 1.48492 * 109.47108 * 330.00011 * 13 11 9 17 17 C 1.34373 * 125.74750 * 180.02562 * 2 1 3 18 18 Cl 1.73605 * 126.32234 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46360 * 269.96912 * 1 2 3 20 20 H 1.08995 * 109.47002 * 29.96674 * 1 2 3 21 21 H 1.08995 * 109.46914 * 149.97184 * 1 2 3 22 22 H 1.07998 * 125.97312 * 180.26171 * 4 3 2 23 23 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 24 24 H 0.97005 * 119.99639 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5311 0.7594 0.0048 5 6 3.5628 -0.6539 -0.0009 6 6 4.7665 -1.5018 -0.0008 7 8 4.6571 -2.7133 -0.0004 8 7 5.9895 -0.9356 -0.0012 9 6 7.1094 -1.7245 -0.0006 10 1 7.0123 -2.8001 -0.0002 11 6 8.3706 -1.1407 -0.0005 12 7 8.4887 0.1682 -0.0004 13 14 9.8978 -2.2164 -0.0003 14 1 10.3025 -2.5014 -1.4004 15 1 11.0006 -1.5102 0.6998 16 1 9.6041 -3.4927 0.6996 17 6 2.2501 -1.0906 -0.0005 18 17 1.7156 -2.7423 -0.0006 19 1 -0.3632 -0.0006 1.0278 20 1 -0.3633 0.8902 -0.5133 21 1 -0.3633 -0.8897 -0.5143 22 1 4.3907 1.4132 0.0101 23 1 6.0768 0.0304 -0.0012 24 1 9.3690 0.5757 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260162182.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:30 Heat of formation + Delta-G solvation = 12.765546 kcal Electronic energy + Delta-G solvation = -13384.021905 eV Core-core repulsion = 10745.364313 eV Total energy + Delta-G solvation = -2638.657592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.36775 -39.64268 -37.90748 -35.92044 -34.48696 -33.14338 -31.17147 -28.39015 -26.68486 -23.67621 -22.11220 -20.97522 -19.96970 -18.66516 -17.15405 -16.91289 -16.46692 -15.87492 -15.58318 -15.15942 -14.80851 -14.34879 -13.73696 -13.57878 -13.44784 -13.04538 -12.88888 -12.74788 -12.36873 -12.07767 -11.81754 -11.48538 -10.46642 -10.38912 -10.00432 -9.70058 -8.44074 -5.88600 0.26380 0.30857 1.08550 1.46352 1.49045 1.58810 1.63690 2.34276 2.54066 3.12048 3.36534 3.61264 3.98140 4.10917 4.33689 4.40050 4.60525 4.74863 5.22618 5.46004 5.54388 6.03527 6.30633 6.63198 7.14534 7.58226 8.13912 8.73763 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.047290 B = 0.007183 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.954316 B = 3896.978463 C = 4473.787589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.351 5.351 3 N -0.283 5.283 4 C 0.084 3.916 5 C -0.268 4.268 6 C 0.509 3.491 7 O -0.621 6.621 8 N -0.559 5.559 9 C -0.329 4.329 10 H 0.084 0.916 11 C -0.013 4.013 12 N -0.917 5.917 13 Si 0.996 3.004 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.272 1.272 17 C 0.162 3.838 18 Cl 0.027 6.973 19 H 0.101 0.899 20 H 0.117 0.883 21 H 0.106 0.894 22 H 0.212 0.788 23 H 0.397 0.603 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 2.110 -0.038 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.134 5.134 3 N -0.105 5.105 4 C -0.102 4.102 5 C -0.284 4.284 6 C 0.297 3.703 7 O -0.509 6.509 8 N -0.194 5.194 9 C -0.458 4.458 10 H 0.102 0.898 11 C -0.213 4.213 12 N -0.557 5.557 13 Si 0.820 3.180 14 H -0.196 1.196 15 H -0.196 1.196 16 H -0.197 1.197 17 C 0.002 3.998 18 Cl 0.056 6.944 19 H 0.119 0.881 20 H 0.135 0.865 21 H 0.124 0.876 22 H 0.229 0.771 23 H 0.231 0.769 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.522 2.298 -0.037 14.703 hybrid contribution 1.314 -0.776 0.002 1.526 sum -13.208 1.521 -0.036 13.295 Atomic orbital electron populations 1.22496 0.70469 1.06873 1.05941 1.48817 1.08600 1.01188 1.54824 1.77180 1.01837 1.05891 1.25631 1.24271 0.96042 0.93061 0.96837 1.20138 0.92242 0.94572 1.21412 1.17247 0.82813 0.87107 0.83146 1.90587 1.86963 1.15214 1.58110 1.41663 1.04065 1.09514 1.64163 1.19726 0.84461 0.92099 1.49530 0.89801 1.26084 1.01537 0.97491 0.96205 1.69672 1.26259 1.10033 1.49739 0.84878 0.76731 0.77797 0.78631 1.19647 1.19568 1.19663 1.21947 0.90688 0.84449 1.02681 1.98409 1.89540 1.10127 1.96369 0.88061 0.86474 0.87600 0.77125 0.76886 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 11.28 127.77 1.44 2.74 14 2 N -0.35 -10.01 3.98 -357.32 -1.42 -11.43 14 3 N -0.28 -8.97 12.49 -56.25 -0.70 -9.67 14 4 C 0.08 2.91 11.50 85.67 0.99 3.90 14 5 C -0.27 -11.00 6.13 -20.12 -0.12 -11.12 14 6 C 0.51 25.89 7.76 86.61 0.67 26.56 14 7 O -0.62 -35.11 15.22 -4.15 -0.06 -35.17 14 8 N -0.56 -29.51 5.27 -310.13 -1.64 -31.15 14 9 C -0.33 -18.74 9.68 84.07 0.81 -17.93 14 10 H 0.08 5.05 7.15 -2.91 -0.02 5.03 14 11 C -0.01 -0.69 5.50 84.93 0.47 -0.23 14 12 N -0.92 -49.15 13.05 21.67 0.28 -48.86 14 13 Si 1.00 42.72 29.55 68.60 2.03 44.75 14 14 H -0.27 -11.28 7.11 99.48 0.71 -10.58 14 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 14 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 17 C 0.16 5.67 7.53 84.33 0.64 6.31 14 18 Cl 0.03 0.89 27.35 -2.72 -0.07 0.81 14 19 H 0.10 1.26 8.14 -2.38 -0.02 1.24 14 20 H 0.12 1.43 8.14 -2.39 -0.02 1.41 14 21 H 0.11 1.37 7.77 -2.39 -0.02 1.35 14 22 H 0.21 6.42 7.50 -2.91 -0.02 6.40 14 23 H 0.40 19.69 6.85 -92.71 -0.63 19.05 14 24 H 0.28 13.95 8.31 -92.70 -0.77 13.18 14 Total: -1.00 -68.61 241.49 3.92 -64.69 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.62 Total: 15.81 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.89 Total: 10.22 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -3.48 Total: -101.11 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.06 Total: -35.17 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.07 Total: 0.81 kcal Total: -68.61 3.92 -64.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162182.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.455 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds