Wall clock time and date at job start Mon Mar 30 2020 03:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36867 * 119.99867 * 2 1 4 4 H 1.08003 * 120.00138 * 173.39305 * 3 2 1 5 5 C 1.39010 * 120.00076 * 353.39491 * 3 2 1 6 6 N 1.31394 * 120.00217 * 5.12540 * 5 3 2 7 7 Si 1.86804 * 119.99862 * 185.12672 * 5 3 2 8 8 H 1.48493 * 109.47284 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47178 * 120.00180 * 7 5 3 10 10 H 1.48503 * 109.47052 * 239.99527 * 7 5 3 11 11 C 1.34774 * 120.00069 * 179.97438 * 2 1 3 12 12 O 1.21759 * 119.99871 * 5.74057 * 11 2 1 13 13 C 1.46364 * 119.99802 * 185.74090 * 11 2 1 14 14 O 1.35005 * 126.10423 * 354.15512 * 13 11 2 15 15 C 1.33941 * 109.45651 * 179.73471 * 14 13 11 16 16 C 1.35079 * 109.05092 * 359.97438 * 15 14 13 17 17 C 1.37836 * 126.10049 * 173.83946 * 13 11 2 18 18 Cl 1.73595 * 126.74543 * 0.24422 * 17 13 11 19 19 H 1.08994 * 109.47105 * 184.62937 * 1 2 3 20 20 H 1.09003 * 109.47031 * 304.62653 * 1 2 3 21 21 H 1.08998 * 109.47040 * 64.62435 * 1 2 3 22 22 H 0.97000 * 120.00280 * 180.02562 * 6 5 3 23 23 H 1.08002 * 125.47266 * 180.02562 * 15 14 13 24 24 H 1.07999 * 126.40448 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.2240 1.1885 0.1076 5 6 1.4612 2.3852 -0.1385 6 7 0.1476 2.3896 -0.1681 7 14 2.4040 3.9914 -0.2824 8 1 3.8620 3.7167 -0.2212 9 1 2.0765 4.6434 -1.5759 10 1 2.0229 4.8910 0.8359 11 6 2.1389 -1.1672 0.0005 12 8 1.5347 -2.2190 -0.1045 13 6 3.5970 -1.1702 0.1273 14 8 4.3968 -0.0826 0.1395 15 6 5.6722 -0.4682 0.2764 16 6 5.7193 -1.8158 0.3560 17 6 4.3982 -2.2837 0.2617 18 17 3.8769 -3.9390 0.3068 19 1 -0.3633 -1.0243 0.0829 20 1 -0.3633 0.5840 0.8457 21 1 -0.3633 0.4404 -0.9285 22 1 -0.3326 3.2268 -0.2651 23 1 6.5257 0.1924 0.3176 24 1 6.6068 -2.4205 0.4705 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165742.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:04 Heat of formation + Delta-G solvation = -19.486663 kcal Electronic energy + Delta-G solvation = -13939.577640 eV Core-core repulsion = 11267.228736 eV Total energy + Delta-G solvation = -2672.348904 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.53207 -40.15133 -37.57844 -36.86998 -33.80951 -33.41748 -30.99153 -28.39507 -26.65128 -23.42326 -22.66722 -21.24348 -20.23729 -17.85716 -17.53859 -17.29735 -16.28322 -16.15775 -15.71445 -15.09505 -14.65538 -14.25909 -13.92673 -13.69011 -13.52451 -13.21283 -12.77192 -12.71570 -12.09202 -12.00599 -11.83643 -11.14216 -10.67754 -10.55266 -10.09884 -9.47523 -8.33983 -5.94880 0.09823 1.11731 1.37253 1.45149 1.47085 1.60690 2.05459 2.26216 2.28901 2.92035 3.11344 3.88095 4.01333 4.40356 4.54307 4.84220 4.88680 5.09227 5.28948 5.32320 5.55450 5.63206 6.00691 6.40040 6.97058 7.39678 7.77915 8.59727 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.034897 B = 0.010246 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.159092 B = 2732.122349 C = 3514.752675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.434 5.434 3 C -0.358 4.358 4 H 0.137 0.863 5 C -0.010 4.010 6 N -0.893 5.893 7 Si 1.002 2.998 8 H -0.250 1.250 9 H -0.276 1.276 10 H -0.274 1.274 11 C 0.485 3.515 12 O -0.613 6.613 13 C -0.044 4.044 14 O -0.147 6.147 15 C -0.015 4.015 16 C -0.210 4.210 17 C -0.094 4.094 18 Cl -0.029 7.029 19 H 0.039 0.961 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.275 0.725 23 H 0.260 0.740 24 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -0.644 1.078 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.148 5.148 3 C -0.484 4.484 4 H 0.153 0.847 5 C -0.212 4.212 6 N -0.531 5.531 7 Si 0.824 3.176 8 H -0.173 1.173 9 H -0.201 1.201 10 H -0.199 1.199 11 C 0.276 3.724 12 O -0.504 6.504 13 C -0.098 4.098 14 O -0.042 6.042 15 C -0.084 4.084 16 C -0.229 4.229 17 C -0.125 4.125 18 Cl 0.000 7.000 19 H 0.057 0.943 20 H 0.083 0.917 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.276 0.724 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.458 -0.809 0.991 10.536 hybrid contribution -0.189 0.345 -0.051 0.397 sum 10.270 -0.464 0.940 10.323 Atomic orbital electron populations 1.21484 0.78900 0.97659 1.02806 1.44045 1.07120 1.05515 1.58128 1.21015 0.94776 0.82966 1.49673 0.84675 1.26419 0.96696 1.03234 0.94874 1.70331 1.07550 1.28827 1.46413 0.84730 0.79111 0.75786 0.78002 1.17280 1.20149 1.19948 1.16700 0.84348 0.84237 0.87144 1.90701 1.67542 1.31550 1.60624 1.22154 0.91578 0.84613 1.11417 1.84532 1.17799 1.32441 1.69419 1.25394 0.85748 0.96274 1.00936 1.21842 0.95707 0.95401 1.09991 1.21685 0.94529 0.86362 1.09944 1.98309 1.91065 1.13725 1.96903 0.94269 0.91671 0.92417 0.91472 0.72429 0.79017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.99 8.85 127.77 1.13 8.12 14 2 N -0.43 -23.46 3.02 -663.79 -2.00 -25.46 14 3 C -0.36 -18.53 9.35 84.09 0.79 -17.75 14 4 H 0.14 6.60 4.15 -23.00 -0.10 6.50 14 5 C -0.01 -0.50 5.46 84.94 0.46 -0.03 14 6 N -0.89 -45.90 9.44 21.67 0.20 -45.69 14 7 Si 1.00 38.16 29.56 68.60 2.03 40.19 14 8 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14 9 H -0.28 -10.39 7.11 99.48 0.71 -9.68 14 10 H -0.27 -10.20 7.11 99.48 0.71 -9.49 14 11 C 0.49 25.79 7.59 86.36 0.66 26.44 14 12 O -0.61 -34.53 14.98 -4.54 -0.07 -34.59 14 13 C -0.04 -1.99 6.86 24.29 0.17 -1.82 14 14 O -0.15 -5.74 7.17 -6.08 -0.04 -5.78 14 15 C -0.01 -0.39 12.05 67.09 0.81 0.42 14 16 C -0.21 -5.88 10.87 22.09 0.24 -5.64 14 17 C -0.09 -3.64 6.80 22.72 0.15 -3.49 14 18 Cl -0.03 -1.09 27.92 -2.72 -0.08 -1.16 14 19 H 0.04 1.99 6.94 -2.39 -0.02 1.97 14 20 H 0.06 3.43 7.01 -2.39 -0.02 3.41 14 21 H 0.06 3.07 7.09 -2.39 -0.02 3.05 14 22 H 0.27 13.14 8.31 -92.71 -0.77 12.37 14 23 H 0.26 3.62 8.06 -2.91 -0.02 3.60 14 24 H 0.19 3.75 8.06 -2.91 -0.02 3.73 14 Total: -1.00 -64.50 230.85 5.61 -58.90 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.16 Total: 7.36 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 4.41 Total: 6.24 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.80 Total: -71.15 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.11 Total: -40.38 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -64.50 5.61 -58.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165742.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.412 kcal (2) G-P(sol) polarization free energy of solvation -64.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds