Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99859 * 3 2 1 5 5 H 1.48490 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00300 * 3 2 1 7 7 C 1.38790 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.36837 * 120.00159 * 0.27456 * 7 2 1 10 10 C 1.39335 * 120.00015 * 179.72319 * 9 7 2 11 11 C 1.39067 * 120.09189 * 359.72116 * 10 9 7 12 12 C 1.38047 * 119.92024 * 179.76691 * 11 10 9 13 13 C 1.38352 * 120.10867 * 0.51305 * 12 11 10 14 14 C 1.50705 * 119.90197 * 179.71988 * 13 12 11 15 15 F 1.39904 * 109.47285 * 270.02411 * 14 13 12 16 16 C 1.38300 * 120.19586 * 359.74255 * 13 12 11 17 17 C 1.38175 * 120.07052 * 0.02562 * 16 13 12 18 18 Cl 1.73605 * 120.05464 * 179.97438 * 17 16 13 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99637 * 359.72586 * 9 7 2 21 21 H 1.08002 * 120.04137 * 0.02562 * 11 10 9 22 22 H 1.07999 * 119.94858 * 180.25584 * 12 11 10 23 23 H 1.08998 * 109.46992 * 30.02203 * 14 13 12 24 24 H 1.09001 * 109.47207 * 150.01971 * 14 13 12 25 25 H 1.07999 * 119.96281 * 180.02562 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0899 -1.2020 -0.0010 9 7 1.3257 -2.3870 -0.0067 10 6 2.0223 -3.5937 -0.0131 11 6 3.4130 -3.5959 -0.0190 12 6 4.0996 -4.7935 -0.0205 13 6 3.4065 -5.9909 -0.0267 14 6 4.1608 -7.2956 -0.0347 15 9 4.3938 -7.6916 -1.3561 16 6 2.0235 -5.9941 -0.0262 17 6 1.3284 -4.8000 -0.0200 18 17 -0.4076 -4.8044 -0.0200 19 1 -0.4850 0.8401 0.0004 20 1 0.3557 -2.3869 -0.0068 21 1 3.9552 -2.6619 -0.0183 22 1 5.1796 -4.7958 -0.0209 23 1 5.1133 -7.1677 0.4795 24 1 3.5724 -8.0586 0.4750 25 1 1.4863 -6.9310 -0.0307 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -43.513722 kcal Electronic energy + Delta-G solvation = -13183.779179 eV Core-core repulsion = 10522.761173 eV Total energy + Delta-G solvation = -2661.018006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.11611 -38.60727 -35.55282 -35.40957 -32.30747 -29.86357 -29.58063 -25.84919 -23.94183 -22.00655 -20.39875 -17.91397 -16.87930 -15.78226 -15.41998 -15.30150 -14.76823 -14.32329 -13.81296 -13.17509 -12.94861 -12.93539 -12.46624 -11.68387 -11.46239 -11.08044 -10.85258 -10.67551 -10.63788 -10.54416 -10.28865 -10.09737 -9.88254 -8.90871 -7.99889 -6.90532 -6.75024 -3.92121 2.17402 2.26604 3.07257 3.08082 3.09118 3.11994 3.90746 4.39642 5.01170 5.04049 5.26224 5.30624 5.34108 5.68410 5.90495 6.15708 6.32228 6.57255 6.78829 6.94016 7.11441 7.16961 7.35856 7.52260 7.79705 8.55639 9.10630 9.31921 10.39975 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.007754 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.003262 B = 3610.131170 C = 4392.073322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.308 4.308 8 H 0.107 0.893 9 N -0.535 5.535 10 C 0.213 3.787 11 C -0.216 4.216 12 C -0.034 4.034 13 C -0.272 4.272 14 C 0.128 3.872 15 F -0.226 7.226 16 C -0.021 4.021 17 C -0.163 4.163 18 Cl -0.102 7.102 19 H 0.280 0.720 20 H 0.406 0.594 21 H 0.124 0.876 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -6.851 1.223 8.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.438 4.438 8 H 0.124 0.876 9 N -0.134 5.134 10 C 0.086 3.914 11 C -0.240 4.240 12 C -0.054 4.054 13 C -0.277 4.277 14 C 0.074 3.926 15 F -0.208 7.208 16 C -0.041 4.041 17 C -0.196 4.196 18 Cl -0.074 7.074 19 H 0.090 0.910 20 H 0.243 0.757 21 H 0.142 0.858 22 H 0.126 0.874 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.032 -6.303 1.196 7.577 hybrid contribution -0.305 0.870 -0.057 0.923 sum 3.727 -5.434 1.139 6.687 Atomic orbital electron populations 1.69704 1.06168 1.29214 1.46317 1.25424 0.95787 1.00293 0.96581 0.85806 0.78875 0.79741 0.79319 1.19454 1.20529 1.19467 1.19799 0.93317 0.82564 1.48076 0.87581 1.41284 1.08948 1.02038 1.61170 1.17535 0.91569 0.84961 0.97300 1.20324 0.91538 0.97904 1.14221 1.20517 0.98124 0.91561 0.95165 1.19168 0.93020 0.94206 1.21286 1.20457 0.99523 0.94222 0.78447 1.92762 1.96073 1.92205 1.39725 1.20229 0.92971 0.95198 0.95661 1.19878 0.82096 0.93779 1.23806 1.98269 1.12555 1.98667 1.97900 0.91027 0.75673 0.85839 0.87406 0.91310 0.91470 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.10 13.05 55.49 0.72 -22.37 15 2 C 0.02 0.61 5.50 -17.45 -0.10 0.51 15 3 Si 0.94 19.15 29.55 -169.99 -5.02 14.13 15 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.31 -7.73 9.56 -15.11 -0.14 -7.87 15 8 H 0.11 2.50 5.68 -52.49 -0.30 2.21 15 9 N -0.54 -13.26 5.39 -9.58 -0.05 -13.31 15 10 C 0.21 4.83 6.62 -83.80 -0.55 4.27 15 11 C -0.22 -4.48 9.30 -39.34 -0.37 -4.84 15 12 C -0.03 -0.61 9.69 -39.61 -0.38 -0.99 15 13 C -0.27 -4.78 5.60 -104.55 -0.59 -5.37 15 14 C 0.13 1.83 7.67 36.01 0.28 2.10 15 15 F -0.23 -3.74 17.34 2.25 0.04 -3.70 15 16 C -0.02 -0.38 9.47 -39.58 -0.37 -0.76 15 17 C -0.16 -3.40 6.34 -39.26 -0.25 -3.65 15 18 Cl -0.10 -2.02 27.60 -51.86 -1.43 -3.45 15 19 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 20 H 0.41 10.37 6.56 -40.82 -0.27 10.11 15 21 H 0.12 2.51 5.96 -52.49 -0.31 2.19 15 22 H 0.11 1.65 8.06 -52.49 -0.42 1.22 15 23 H 0.07 0.82 8.08 -51.93 -0.42 0.40 15 24 H 0.07 0.82 8.08 -51.93 -0.42 0.40 15 25 H 0.11 1.83 8.06 -52.49 -0.42 1.41 15 LS Contribution 242.81 15.07 3.66 3.66 Total: -1.00 -26.21 242.81 -6.26 -32.47 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -1.70 Total: 9.18 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.48 Total: -16.59 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.67 Total: -35.68 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -1.43 Total: -3.45 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.21 -6.26 -32.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.047 kcal (2) G-P(sol) polarization free energy of solvation -26.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds