Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99859 * 3 2 1 5 5 H 1.48490 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00300 * 3 2 1 7 7 C 1.38790 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.36837 * 120.00159 * 0.27456 * 7 2 1 10 10 C 1.39335 * 120.00015 * 179.72319 * 9 7 2 11 11 C 1.39067 * 120.09189 * 359.72116 * 10 9 7 12 12 C 1.38047 * 119.92024 * 179.76691 * 11 10 9 13 13 C 1.38352 * 120.10867 * 0.51305 * 12 11 10 14 14 C 1.50705 * 119.90197 * 179.71988 * 13 12 11 15 15 F 1.39904 * 109.47285 * 270.02411 * 14 13 12 16 16 C 1.38300 * 120.19586 * 359.74255 * 13 12 11 17 17 C 1.38175 * 120.07052 * 0.02562 * 16 13 12 18 18 Cl 1.73605 * 120.05464 * 179.97438 * 17 16 13 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99637 * 359.72586 * 9 7 2 21 21 H 1.08002 * 120.04137 * 0.02562 * 11 10 9 22 22 H 1.07999 * 119.94858 * 180.25584 * 12 11 10 23 23 H 1.08998 * 109.46992 * 30.02203 * 14 13 12 24 24 H 1.09001 * 109.47207 * 150.01971 * 14 13 12 25 25 H 1.07999 * 119.96281 * 180.02562 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0899 -1.2020 -0.0010 9 7 1.3257 -2.3870 -0.0067 10 6 2.0223 -3.5937 -0.0131 11 6 3.4130 -3.5959 -0.0190 12 6 4.0996 -4.7935 -0.0205 13 6 3.4065 -5.9909 -0.0267 14 6 4.1608 -7.2956 -0.0347 15 9 4.3938 -7.6916 -1.3561 16 6 2.0235 -5.9941 -0.0262 17 6 1.3284 -4.8000 -0.0200 18 17 -0.4076 -4.8044 -0.0200 19 1 -0.4850 0.8401 0.0004 20 1 0.3557 -2.3869 -0.0068 21 1 3.9552 -2.6619 -0.0183 22 1 5.1796 -4.7958 -0.0209 23 1 5.1133 -7.1677 0.4795 24 1 3.5724 -8.0586 0.4750 25 1 1.4863 -6.9310 -0.0307 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -57.480320 kcal Electronic energy + Delta-G solvation = -13184.384816 eV Core-core repulsion = 10522.761173 eV Total energy + Delta-G solvation = -2661.623643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.34319 -40.22613 -37.14975 -37.06298 -34.02441 -31.43357 -31.11735 -27.46042 -25.48597 -23.60529 -21.93576 -19.65776 -18.50255 -17.22355 -16.83040 -16.55736 -16.31911 -15.87263 -15.29272 -14.78247 -14.60026 -14.52163 -13.98024 -13.33377 -13.11874 -12.67620 -12.45595 -12.15827 -12.08065 -11.98095 -11.86590 -11.58417 -11.40115 -10.65553 -9.56062 -8.60617 -8.53240 -5.79243 0.58194 0.69967 1.41227 1.49417 1.50364 1.53059 2.24858 2.76648 3.25180 3.34243 3.96698 4.03581 4.25552 4.31023 4.49223 4.74631 4.95144 5.02984 5.20152 5.25192 5.48346 5.52222 5.75343 5.85327 6.22243 6.74508 7.37866 7.52265 8.64338 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.007754 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.003262 B = 3610.131170 C = 4392.073322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.003 2.997 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.325 4.325 8 H 0.112 0.888 9 N -0.571 5.571 10 C 0.197 3.803 11 C -0.231 4.231 12 C -0.030 4.030 13 C -0.252 4.252 14 C 0.125 3.875 15 F -0.237 7.237 16 C -0.027 4.027 17 C -0.176 4.176 18 Cl -0.098 7.098 19 H 0.277 0.723 20 H 0.396 0.604 21 H 0.122 0.878 22 H 0.145 0.855 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -8.813 1.439 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.228 4.228 3 Si 0.825 3.175 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.129 0.871 9 N -0.174 5.174 10 C 0.076 3.924 11 C -0.255 4.255 12 C -0.049 4.049 13 C -0.257 4.257 14 C 0.071 3.929 15 F -0.218 7.218 16 C -0.046 4.046 17 C -0.209 4.209 18 Cl -0.070 7.070 19 H 0.086 0.914 20 H 0.231 0.769 21 H 0.140 0.860 22 H 0.162 0.838 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.216 -8.334 1.412 10.492 hybrid contribution -0.825 1.058 -0.121 1.347 sum 5.391 -7.276 1.291 9.147 Atomic orbital electron populations 1.69821 1.07604 1.29521 1.49548 1.26291 0.96512 1.03280 0.96670 0.84818 0.77505 0.75630 0.79500 1.18872 1.20741 1.18709 1.20090 0.93693 0.83279 1.48409 0.87058 1.41238 1.08329 1.02504 1.65334 1.18065 0.92648 0.85175 0.96549 1.20564 0.91025 0.99246 1.14702 1.20962 1.00069 0.90632 0.93286 1.19785 0.92922 0.95991 1.16975 1.20725 1.01250 0.92793 0.78168 1.92746 1.96176 1.92134 1.40791 1.20651 0.93791 0.95370 0.94788 1.20222 0.82719 0.94185 1.23756 1.98268 1.12204 1.98652 1.97893 0.91382 0.76921 0.86033 0.83767 0.88047 0.88625 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.02 13.05 21.65 0.28 -50.74 15 2 C -0.03 -1.44 5.50 84.86 0.47 -0.98 15 3 Si 1.00 40.26 29.55 68.60 2.03 42.28 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 5 H -0.28 -11.23 7.11 99.48 0.71 -10.53 15 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 7 C -0.33 -16.86 9.56 84.04 0.80 -16.06 15 8 H 0.11 5.38 5.68 -2.91 -0.02 5.37 15 9 N -0.57 -29.25 5.39 -184.22 -0.99 -30.24 15 10 C 0.20 8.95 6.62 38.37 0.25 9.20 15 11 C -0.23 -9.31 9.30 22.42 0.21 -9.10 15 12 C -0.03 -0.99 9.69 22.25 0.22 -0.77 15 13 C -0.25 -7.81 5.60 -19.82 -0.11 -7.92 15 14 C 0.12 2.86 7.67 71.24 0.55 3.41 15 15 F -0.24 -6.74 17.34 44.97 0.78 -5.96 15 16 C -0.03 -0.91 9.47 22.27 0.21 -0.70 15 17 C -0.18 -7.18 6.34 22.48 0.14 -7.04 15 18 Cl -0.10 -3.88 27.60 -2.72 -0.08 -3.95 15 19 H 0.28 14.37 8.31 -92.70 -0.77 13.60 15 20 H 0.40 21.19 6.56 -92.71 -0.61 20.59 15 21 H 0.12 4.89 5.96 -2.91 -0.02 4.87 15 22 H 0.14 3.68 8.06 -2.91 -0.02 3.65 15 23 H 0.10 1.76 8.08 -2.39 -0.02 1.74 15 24 H 0.10 1.74 8.08 -2.39 -0.02 1.72 15 25 H 0.14 3.98 8.06 -2.91 -0.02 3.96 15 Total: -1.00 -57.80 242.81 5.38 -52.42 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.62 Total: 26.14 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 2.74 Total: -29.95 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -0.71 Total: -80.98 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.78 Total: -5.96 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 17 Polarization: -3.88 SS G_CDS: -0.08 Total: -3.95 kcal Total: -57.80 5.38 -52.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.061 kcal (2) G-P(sol) polarization free energy of solvation -57.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds