Wall clock time and date at job start Mon Mar 30 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00014 * 2 1 4 4 C 1.46900 * 110.99549 * 123.95129 * 2 1 3 5 5 C 1.53000 * 109.46982 * 170.00173 * 4 2 1 6 6 H 1.08995 * 109.54359 * 54.85477 * 5 4 2 7 7 C 1.53097 * 109.50765 * 174.97361 * 5 4 2 8 8 O 1.43015 * 109.25642 * 176.78404 * 7 5 4 9 9 C 1.43012 * 113.73700 * 301.32368 * 8 7 5 10 10 C 1.53099 * 109.26145 * 58.67542 * 9 8 7 11 11 N 1.47018 * 109.50135 * 294.75330 * 5 4 2 12 12 C 1.46896 * 111.00603 * 57.67328 * 11 5 4 13 13 C 1.50696 * 109.47433 * 171.73308 * 12 11 5 14 14 H 1.07999 * 120.00106 * 5.33802 * 13 12 11 15 15 C 1.37874 * 120.00065 * 185.34290 * 13 12 11 16 16 N 1.31521 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47042 * 269.99871 * 17 15 13 19 19 H 1.48501 * 109.46884 * 29.99508 * 17 15 13 20 20 H 1.48496 * 109.47378 * 149.99824 * 17 15 13 21 21 H 1.08994 * 109.47280 * 296.05250 * 1 2 3 22 22 H 1.09005 * 109.46981 * 56.04824 * 1 2 3 23 23 H 1.09000 * 109.47358 * 176.04321 * 1 2 3 24 24 H 1.09001 * 109.47099 * 183.95070 * 3 2 1 25 25 H 1.09000 * 109.47519 * 303.95278 * 3 2 1 26 26 H 1.09005 * 109.47502 * 63.95293 * 3 2 1 27 27 H 1.08996 * 109.47039 * 50.00083 * 4 2 1 28 28 H 1.09001 * 109.47032 * 290.00157 * 4 2 1 29 29 H 1.09002 * 109.50355 * 296.71360 * 7 5 4 30 30 H 1.08997 * 109.50734 * 56.79820 * 7 5 4 31 31 H 1.09006 * 109.50681 * 178.60975 * 9 8 7 32 32 H 1.08999 * 109.51116 * 298.69510 * 9 8 7 33 33 H 1.08994 * 109.50854 * 183.21705 * 10 9 8 34 34 H 1.09001 * 109.50766 * 63.07888 * 10 9 8 35 35 H 1.09007 * 109.47011 * 51.73376 * 12 11 5 36 36 H 1.08995 * 109.46870 * 291.74015 * 12 11 5 37 37 H 0.96997 * 119.99924 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9705 6 1 3.9816 0.0160 0.8408 7 6 4.0742 -1.6430 2.2140 8 8 5.4704 -1.8850 2.0211 9 6 5.7617 -2.6977 0.8809 10 6 5.2090 -2.0208 -0.3762 11 7 3.7662 -1.7924 -0.2094 12 6 3.1847 -1.1946 -1.4187 13 6 3.6418 -1.9657 -2.6300 14 1 4.2275 -2.8649 -2.5084 15 6 3.3124 -1.5233 -3.8936 16 7 2.5988 -0.4285 -4.0417 17 14 3.8785 -2.4795 -5.3952 18 1 5.2040 -1.9735 -5.8336 19 1 3.9874 -3.9203 -5.0523 20 1 2.8941 -2.3050 -6.4932 21 1 -0.3633 0.4513 0.9232 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7044 1.8724 0.9233 27 1 1.5089 -1.7406 1.1757 28 1 1.7974 -0.2247 2.0628 29 1 3.9329 -0.9998 3.0825 30 1 3.5587 -2.5899 2.3747 31 1 6.8409 -2.8173 0.7853 32 1 5.2965 -3.6759 1.0027 33 1 5.3783 -2.6636 -1.2400 34 1 5.7134 -1.0664 -0.5274 35 1 3.5100 -0.1577 -1.5039 36 1 2.0972 -1.2300 -1.3544 37 1 2.3675 -0.1170 -4.9307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260582423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:07 Heat of formation + Delta-G solvation = -13.504229 kcal Electronic energy + Delta-G solvation = -17356.148772 eV Core-core repulsion = 14748.568067 eV Total energy + Delta-G solvation = -2607.580705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27312 -36.97531 -34.62888 -32.38130 -31.23211 -28.18723 -27.14006 -26.27664 -25.22192 -22.69314 -21.65186 -20.85210 -19.17958 -16.39626 -15.78972 -15.66142 -15.24030 -14.71909 -14.54298 -14.31991 -13.87308 -13.66714 -13.09334 -12.72529 -12.01951 -11.92955 -11.71709 -11.46603 -11.25726 -11.08994 -11.07610 -10.73713 -10.60431 -10.56641 -10.43163 -9.99626 -9.73662 -9.15514 -8.80275 -8.34298 -7.41158 -6.98553 -5.86962 -3.86547 3.36496 3.43092 3.46539 4.23981 4.45136 4.51880 4.89884 5.38781 5.46781 5.51099 5.56784 5.62432 5.70386 5.76650 5.80961 5.87346 5.89551 5.97403 6.02853 6.10936 6.23742 6.33162 6.38697 6.49168 6.69397 6.78966 7.50553 7.53936 7.55139 7.72053 7.79408 7.92620 8.38402 8.51839 8.78356 9.23910 9.74585 11.22353 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.011097 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.444840 B = 2522.520871 C = 3589.988596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.516 5.516 3 C 0.029 3.971 4 C 0.068 3.932 5 C 0.049 3.951 6 H 0.039 0.961 7 C 0.072 3.928 8 O -0.394 6.394 9 C 0.060 3.940 10 C 0.026 3.974 11 N -0.527 5.527 12 C 0.192 3.808 13 C -0.518 4.518 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.275 1.275 20 H -0.288 1.288 21 H 0.012 0.988 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.011 0.989 27 H 0.080 0.920 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.026 0.974 35 H -0.009 1.009 36 H 0.081 0.919 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 0.234 10.373 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.239 5.239 3 C -0.119 4.119 4 C -0.060 4.060 5 C -0.061 4.061 6 H 0.057 0.943 7 C -0.006 4.006 8 O -0.312 6.312 9 C -0.017 4.017 10 C -0.102 4.102 11 N -0.254 5.254 12 C 0.067 3.933 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.200 1.200 20 H -0.214 1.214 21 H 0.031 0.969 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.009 0.991 36 H 0.098 0.902 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.596 -0.256 9.989 10.010 hybrid contribution 0.241 0.699 -0.640 0.978 sum -0.355 0.443 9.349 9.366 Atomic orbital electron populations 1.22328 0.88033 1.02068 0.99466 1.62480 1.06941 1.13153 1.41301 1.22406 1.01283 0.88955 0.99223 1.22032 0.94948 0.98502 0.90566 1.22247 0.94817 0.95734 0.93287 0.94296 1.22573 0.82038 0.99497 0.96514 1.87879 1.23896 1.71908 1.47558 1.22800 0.99712 0.93620 0.85556 1.22673 0.90075 0.99899 0.97597 1.62534 1.10856 1.46832 1.05134 1.20216 0.98243 0.91905 0.82889 1.21471 1.33288 1.09793 0.91101 0.92499 1.24902 0.95588 0.95131 0.98614 1.69994 1.38404 1.22418 1.22163 0.86693 0.78246 0.80479 0.83100 1.21035 1.20012 1.21419 0.96924 0.91375 0.91551 0.91441 0.91286 0.97055 0.90176 0.95480 0.89807 0.92788 0.89604 0.92948 0.88532 0.95554 0.99069 0.90173 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.57 60.07 0.57 1.04 16 2 N -0.52 -9.56 1.52 -251.26 -0.38 -9.94 16 3 C 0.03 0.51 8.61 60.06 0.52 1.03 16 4 C 0.07 1.14 4.36 -3.82 -0.02 1.12 16 5 C 0.05 0.91 2.11 -67.60 -0.14 0.77 16 6 H 0.04 0.78 6.33 -51.93 -0.33 0.45 16 7 C 0.07 1.14 6.29 37.21 0.23 1.38 16 8 O -0.39 -6.94 10.83 -35.23 -0.38 -7.32 16 9 C 0.06 1.02 7.01 37.21 0.26 1.28 16 10 C 0.03 0.54 5.23 -3.70 -0.02 0.52 16 11 N -0.53 -11.54 4.67 -227.77 -1.06 -12.60 16 12 C 0.19 4.95 3.54 -4.98 -0.02 4.94 16 13 C -0.52 -14.56 8.33 -34.44 -0.29 -14.85 16 14 H 0.06 1.58 6.07 -52.49 -0.32 1.26 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 22 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 23 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 24 H 0.07 1.28 5.62 -51.93 -0.29 0.99 16 25 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 28 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 2.10 5.84 -51.93 -0.30 1.80 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H -0.01 -0.24 6.67 -51.92 -0.35 -0.59 16 36 H 0.08 2.18 5.69 -51.93 -0.30 1.89 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -30.46 283.73 -6.91 -37.37 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.08 Total: -1.73 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 1.01 Total: -1.20 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.71 Total: -48.18 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.38 Total: -7.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.46 -6.91 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260582423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.869 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds