Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00014 * 2 1 4 4 C 1.46900 * 110.99549 * 123.95129 * 2 1 3 5 5 C 1.53000 * 109.46982 * 170.00173 * 4 2 1 6 6 H 1.08995 * 109.54359 * 54.85477 * 5 4 2 7 7 C 1.53097 * 109.50765 * 174.97361 * 5 4 2 8 8 O 1.43015 * 109.25642 * 176.78404 * 7 5 4 9 9 C 1.43012 * 113.73700 * 301.32368 * 8 7 5 10 10 C 1.53099 * 109.26145 * 58.67542 * 9 8 7 11 11 N 1.47018 * 109.50135 * 294.75330 * 5 4 2 12 12 C 1.46896 * 111.00603 * 57.67328 * 11 5 4 13 13 C 1.50696 * 109.47433 * 171.73308 * 12 11 5 14 14 H 1.07999 * 120.00106 * 5.33802 * 13 12 11 15 15 C 1.37874 * 120.00065 * 185.34290 * 13 12 11 16 16 N 1.31521 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47042 * 269.99871 * 17 15 13 19 19 H 1.48501 * 109.46884 * 29.99508 * 17 15 13 20 20 H 1.48496 * 109.47378 * 149.99824 * 17 15 13 21 21 H 1.08994 * 109.47280 * 296.05250 * 1 2 3 22 22 H 1.09005 * 109.46981 * 56.04824 * 1 2 3 23 23 H 1.09000 * 109.47358 * 176.04321 * 1 2 3 24 24 H 1.09001 * 109.47099 * 183.95070 * 3 2 1 25 25 H 1.09000 * 109.47519 * 303.95278 * 3 2 1 26 26 H 1.09005 * 109.47502 * 63.95293 * 3 2 1 27 27 H 1.08996 * 109.47039 * 50.00083 * 4 2 1 28 28 H 1.09001 * 109.47032 * 290.00157 * 4 2 1 29 29 H 1.09002 * 109.50355 * 296.71360 * 7 5 4 30 30 H 1.08997 * 109.50734 * 56.79820 * 7 5 4 31 31 H 1.09006 * 109.50681 * 178.60975 * 9 8 7 32 32 H 1.08999 * 109.51116 * 298.69510 * 9 8 7 33 33 H 1.08994 * 109.50854 * 183.21705 * 10 9 8 34 34 H 1.09001 * 109.50766 * 63.07888 * 10 9 8 35 35 H 1.09007 * 109.47011 * 51.73376 * 12 11 5 36 36 H 1.08995 * 109.46870 * 291.74015 * 12 11 5 37 37 H 0.96997 * 119.99924 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9705 6 1 3.9816 0.0160 0.8408 7 6 4.0742 -1.6430 2.2140 8 8 5.4704 -1.8850 2.0211 9 6 5.7617 -2.6977 0.8809 10 6 5.2090 -2.0208 -0.3762 11 7 3.7662 -1.7924 -0.2094 12 6 3.1847 -1.1946 -1.4187 13 6 3.6418 -1.9657 -2.6300 14 1 4.2275 -2.8649 -2.5084 15 6 3.3124 -1.5233 -3.8936 16 7 2.5988 -0.4285 -4.0417 17 14 3.8785 -2.4795 -5.3952 18 1 5.2040 -1.9735 -5.8336 19 1 3.9874 -3.9203 -5.0523 20 1 2.8941 -2.3050 -6.4932 21 1 -0.3633 0.4513 0.9232 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7044 1.8724 0.9233 27 1 1.5089 -1.7406 1.1757 28 1 1.7974 -0.2247 2.0628 29 1 3.9329 -0.9998 3.0825 30 1 3.5587 -2.5899 2.3747 31 1 6.8409 -2.8173 0.7853 32 1 5.2965 -3.6759 1.0027 33 1 5.3783 -2.6636 -1.2400 34 1 5.7134 -1.0664 -0.5274 35 1 3.5100 -0.1577 -1.5039 36 1 2.0972 -1.2300 -1.3544 37 1 2.3675 -0.1170 -4.9307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260582423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -34.813688 kcal Electronic energy + Delta-G solvation = -17357.072819 eV Core-core repulsion = 14748.568067 eV Total energy + Delta-G solvation = -2608.504752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76034 -38.35201 -36.31144 -34.40955 -32.73127 -29.98274 -28.48536 -27.77324 -26.98871 -24.15138 -23.49173 -22.34702 -20.72264 -18.40523 -17.31143 -17.13521 -16.79619 -16.32373 -16.01870 -15.93838 -15.33951 -15.14178 -14.72967 -14.49689 -13.76769 -13.46117 -13.10810 -13.02166 -12.85445 -12.64879 -12.59327 -12.45972 -12.41759 -12.22128 -11.98083 -11.80750 -11.30615 -11.01896 -10.55035 -10.36869 -8.96848 -8.68776 -8.05160 -6.12532 1.41079 1.41785 1.52359 2.45577 2.93045 3.13244 3.25785 3.31352 3.99108 4.13824 4.20437 4.29084 4.32083 4.39172 4.43297 4.52782 4.56011 4.66368 4.73946 4.76770 4.82512 4.99228 5.03590 5.06848 5.09487 5.18291 5.61976 5.75583 5.85351 6.17496 6.20507 6.28212 6.31501 6.52520 6.85022 7.08977 7.53264 9.03245 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.011097 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.444840 B = 2522.520871 C = 3589.988596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.554 5.554 3 C 0.040 3.960 4 C 0.073 3.927 5 C 0.047 3.953 6 H 0.019 0.981 7 C 0.075 3.925 8 O -0.401 6.401 9 C 0.070 3.930 10 C 0.026 3.974 11 N -0.533 5.533 12 C 0.215 3.785 13 C -0.536 4.536 14 H 0.056 0.944 15 C 0.007 3.993 16 N -0.922 5.922 17 Si 0.954 3.046 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.284 1.284 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.003 0.997 35 H -0.046 1.046 36 H 0.067 0.933 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -0.736 11.756 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.278 5.278 3 C -0.108 4.108 4 C -0.055 4.055 5 C -0.063 4.063 6 H 0.037 0.963 7 C -0.003 4.003 8 O -0.320 6.320 9 C -0.006 4.006 10 C -0.102 4.102 11 N -0.258 5.258 12 C 0.090 3.910 13 C -0.575 4.575 14 H 0.074 0.926 15 C -0.191 4.191 16 N -0.562 5.562 17 Si 0.779 3.221 18 H -0.205 1.205 19 H -0.191 1.191 20 H -0.210 1.210 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.021 0.979 35 H -0.028 1.028 36 H 0.084 0.916 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.519 -1.236 11.397 11.476 hybrid contribution 0.210 1.034 -1.037 1.479 sum -0.309 -0.202 10.360 10.367 Atomic orbital electron populations 1.22270 0.86477 1.02141 1.00439 1.62298 1.08651 1.13782 1.43044 1.22222 0.99538 0.88964 1.00090 1.22007 0.93382 0.98744 0.91328 1.22419 0.96368 0.94574 0.92945 0.96290 1.22724 0.81147 1.00476 0.95925 1.87879 1.24911 1.71997 1.47210 1.22768 1.01200 0.93279 0.83387 1.22674 0.89431 0.98778 0.99365 1.62462 1.11440 1.47144 1.04803 1.19776 0.97415 0.89661 0.84193 1.21860 1.33220 1.09994 0.92409 0.92564 1.25718 0.95669 0.96072 1.01652 1.70130 1.39430 1.23836 1.22818 0.85632 0.77812 0.79340 0.79274 1.20488 1.19145 1.21015 0.94054 0.92446 0.91637 0.93922 0.92684 0.94026 0.90135 0.92229 0.86555 0.91528 0.87001 0.91825 0.90257 0.97867 1.02783 0.91554 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 9.57 127.69 1.22 2.28 16 2 N -0.55 -20.44 1.52 -948.85 -1.45 -21.89 16 3 C 0.04 1.41 8.61 127.69 1.10 2.50 16 4 C 0.07 2.34 4.36 86.30 0.38 2.72 16 5 C 0.05 1.68 2.11 44.93 0.09 1.78 16 6 H 0.02 0.77 6.33 -2.39 -0.02 0.76 16 7 C 0.07 2.17 6.29 72.01 0.45 2.62 16 8 O -0.40 -13.11 10.83 -148.98 -1.61 -14.72 16 9 C 0.07 2.26 7.01 72.02 0.50 2.76 16 10 C 0.03 1.08 5.23 86.31 0.45 1.54 16 11 N -0.53 -23.45 4.67 -874.53 -4.08 -27.53 16 12 C 0.22 11.46 3.54 85.56 0.30 11.77 16 13 C -0.54 -30.80 8.33 25.60 0.21 -30.59 16 14 H 0.06 3.17 6.07 -2.91 -0.02 3.15 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.92 -55.89 13.29 21.45 0.28 -55.61 16 17 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 1.85 8.12 -2.38 -0.02 1.83 16 23 H 0.06 1.98 8.12 -2.39 -0.02 1.97 16 24 H 0.04 1.68 5.62 -2.39 -0.01 1.67 16 25 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 26 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.08 2.56 8.06 -2.39 -0.02 2.54 16 28 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 29 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 3.51 5.84 -2.39 -0.01 3.50 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H -0.05 -2.73 6.67 -2.38 -0.02 -2.75 16 36 H 0.07 3.73 5.69 -2.39 -0.01 3.71 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -66.38 283.73 1.38 -65.01 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.18 Total: -1.75 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.24 Total: -105.02 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.61 Total: -14.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.38 1.38 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260582423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.193 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds