Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00088 * 2 1 4 4 C 1.46901 * 111.00510 * 123.95246 * 2 1 3 5 5 C 1.53006 * 109.46871 * 76.72363 * 4 2 1 6 6 H 1.08998 * 109.50859 * 307.58272 * 5 4 2 7 7 C 1.53094 * 109.50569 * 187.45075 * 5 4 2 8 8 O 1.43021 * 109.29274 * 183.23859 * 7 5 4 9 9 C 1.43010 * 113.73550 * 58.60395 * 8 7 5 10 10 C 1.53106 * 109.29355 * 301.39631 * 9 8 7 11 11 N 1.47013 * 109.50489 * 67.66888 * 5 4 2 12 12 C 1.46901 * 111.00072 * 302.32900 * 11 5 4 13 13 C 1.50696 * 109.46958 * 302.29085 * 12 11 5 14 14 H 1.07997 * 120.00484 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00208 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47102 * 90.00555 * 17 15 13 19 19 H 1.48504 * 109.46888 * 210.00541 * 17 15 13 20 20 H 1.48497 * 109.47126 * 330.00090 * 17 15 13 21 21 H 1.08999 * 109.47059 * 291.48833 * 1 2 3 22 22 H 1.08997 * 109.47337 * 51.48945 * 1 2 3 23 23 H 1.09004 * 109.47270 * 171.49304 * 1 2 3 24 24 H 1.08999 * 109.47467 * 183.94972 * 3 2 1 25 25 H 1.09000 * 109.47149 * 303.95879 * 3 2 1 26 26 H 1.09006 * 109.47125 * 63.95257 * 3 2 1 27 27 H 1.09003 * 109.47054 * 316.72790 * 4 2 1 28 28 H 1.09000 * 109.47491 * 196.72518 * 4 2 1 29 29 H 1.09000 * 109.51002 * 303.15492 * 7 5 4 30 30 H 1.09011 * 109.50642 * 63.24321 * 7 5 4 31 31 H 1.08999 * 109.50986 * 181.44335 * 9 8 7 32 32 H 1.08997 * 109.51024 * 61.35197 * 9 8 7 33 33 H 1.08996 * 109.50474 * 176.75994 * 10 9 8 34 34 H 1.08992 * 109.50651 * 296.89827 * 10 9 8 35 35 H 1.08997 * 109.46975 * 62.28845 * 12 11 5 36 36 H 1.09003 * 109.46670 * 182.29100 * 12 11 5 37 37 H 0.97002 * 120.00178 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8690 -2.2628 0.8468 6 1 0.8426 -2.4926 0.5609 7 6 2.2426 -3.0601 2.0992 8 8 2.1959 -4.4581 1.8007 9 6 3.0685 -4.8490 0.7372 10 6 2.7033 -4.0697 -0.5291 11 7 2.7776 -2.6283 -0.2496 12 6 2.4888 -1.8425 -1.4567 13 6 1.0543 -2.0576 -1.8650 14 1 0.4205 -2.7129 -1.2860 15 6 0.5511 -1.4187 -2.9783 16 7 -0.7010 -1.6061 -3.3343 17 14 1.6475 -0.2858 -3.9803 18 1 2.3278 -1.0682 -5.0434 19 1 0.8212 0.7801 -4.6020 20 1 2.6648 0.3315 -3.0920 21 1 -0.3633 0.3764 0.9562 22 1 -0.3634 0.6399 -0.8041 23 1 -0.3634 -1.0164 -0.1520 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9233 27 1 1.4272 -0.5208 2.0349 28 1 3.0445 -0.5131 1.2915 29 1 3.2498 -2.7896 2.4160 30 1 1.5366 -2.8342 2.8985 31 1 2.9595 -5.9175 0.5511 32 1 4.1000 -4.6311 1.0139 33 1 3.4024 -4.3224 -1.3262 34 1 1.6903 -4.3291 -0.8366 35 1 2.6530 -0.7850 -1.2497 36 1 3.1481 -2.1613 -2.2641 37 1 -1.0551 -1.1563 -4.1174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260582428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = -8.946011 kcal Electronic energy + Delta-G solvation = -17803.983365 eV Core-core repulsion = 15196.600319 eV Total energy + Delta-G solvation = -2607.383046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27609 -36.87683 -34.62608 -32.21477 -31.20804 -28.61169 -26.91640 -26.22613 -25.05196 -22.66210 -21.50853 -20.75904 -19.03572 -16.66609 -15.85389 -15.70009 -15.21701 -14.55463 -14.46967 -14.09803 -13.77900 -13.54584 -13.24846 -12.49888 -11.95821 -11.88244 -11.82483 -11.45788 -11.14578 -11.04450 -10.90375 -10.81922 -10.53470 -10.32588 -10.12021 -9.89219 -9.80167 -9.31681 -8.95114 -8.36767 -7.26916 -7.01488 -5.88948 -3.79685 3.39024 3.47028 3.54891 4.28168 4.60026 4.62816 4.89061 5.45714 5.51331 5.56844 5.69853 5.72662 5.74567 5.84218 5.85539 5.93693 5.98927 6.05317 6.18867 6.25077 6.32851 6.39017 6.48625 6.72765 6.87018 7.09087 7.15703 7.56142 7.60387 7.78596 7.82818 7.85296 8.21838 8.30904 8.66958 9.12282 9.78216 11.24528 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.012287 C = 0.010009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.636079 B = 2278.288241 C = 2796.879761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.505 5.505 3 C 0.024 3.976 4 C 0.071 3.929 5 C 0.058 3.942 6 H 0.065 0.935 7 C 0.069 3.931 8 O -0.391 6.391 9 C 0.064 3.936 10 C 0.022 3.978 11 N -0.524 5.524 12 C 0.142 3.858 13 C -0.503 4.503 14 H 0.065 0.935 15 C 0.074 3.926 16 N -0.913 5.913 17 Si 0.871 3.129 18 H -0.286 1.286 19 H -0.295 1.295 20 H -0.260 1.260 21 H -0.003 1.003 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.012 0.988 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.002 0.998 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 1.302 8.803 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.227 5.227 3 C -0.124 4.124 4 C -0.058 4.058 5 C -0.052 4.052 6 H 0.083 0.917 7 C -0.009 4.009 8 O -0.309 6.309 9 C -0.013 4.013 10 C -0.107 4.107 11 N -0.249 5.249 12 C 0.016 3.984 13 C -0.542 4.542 14 H 0.083 0.917 15 C -0.125 4.125 16 N -0.554 5.554 17 Si 0.700 3.300 18 H -0.213 1.213 19 H -0.222 1.222 20 H -0.184 1.184 21 H 0.016 0.984 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.020 0.980 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.609 1.124 8.490 10.818 hybrid contribution -0.567 1.038 -0.553 1.305 sum 6.043 2.162 7.937 10.207 Atomic orbital electron populations 1.22359 0.86575 1.04278 0.97130 1.62272 1.08532 1.11075 1.40811 1.22399 1.00314 0.90373 0.99356 1.21971 0.99440 0.93508 0.90850 1.22088 0.97636 0.93630 0.91854 0.91741 1.22652 1.00559 0.81150 0.96537 1.87903 1.65077 1.24065 1.53857 1.22694 0.93012 0.98420 0.87185 1.22601 1.01512 0.90297 0.96321 1.62756 1.49879 1.03266 1.09026 1.20720 0.95071 0.96741 0.85858 1.21411 0.95904 1.26397 1.10453 0.91694 1.24728 0.94427 0.96186 0.97190 1.69937 1.14136 1.44660 1.26666 0.86921 0.81372 0.81278 0.80434 1.21299 1.22204 1.18396 0.98449 0.92258 0.89344 0.92065 0.91988 0.96964 0.95370 0.91185 0.93289 0.89705 0.89591 0.93348 0.90999 0.93079 0.89932 0.98031 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 8.28 60.06 0.50 1.38 16 2 N -0.50 -9.68 1.17 -251.25 -0.29 -9.97 16 3 C 0.02 0.40 9.21 60.07 0.55 0.95 16 4 C 0.07 1.22 4.34 -3.82 -0.02 1.20 16 5 C 0.06 1.09 1.94 -67.60 -0.13 0.96 16 6 H 0.06 1.45 5.18 -51.93 -0.27 1.18 16 7 C 0.07 1.12 6.29 37.21 0.23 1.35 16 8 O -0.39 -6.97 10.83 -35.23 -0.38 -7.35 16 9 C 0.06 1.04 7.01 37.21 0.26 1.30 16 10 C 0.02 0.42 5.38 -3.71 -0.02 0.40 16 11 N -0.52 -10.79 4.75 -227.77 -1.08 -11.87 16 12 C 0.14 3.35 3.60 -4.98 -0.02 3.33 16 13 C -0.50 -13.28 5.12 -34.44 -0.18 -13.46 16 14 H 0.07 1.92 5.76 -52.49 -0.30 1.61 16 15 C 0.07 2.07 5.38 -17.82 -0.10 1.97 16 16 N -0.91 -27.17 13.96 55.43 0.77 -26.40 16 17 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 21 H 0.00 -0.05 7.98 -51.93 -0.41 -0.46 16 22 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 23 H 0.09 2.04 5.47 -51.93 -0.28 1.75 16 24 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 25 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.03 0.44 7.87 -51.93 -0.41 0.03 16 28 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 34 H 0.05 1.14 6.92 -51.93 -0.36 0.78 16 35 H 0.08 1.96 4.14 -51.93 -0.22 1.74 16 36 H 0.00 0.04 7.54 -51.93 -0.39 -0.35 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -29.37 275.52 -6.42 -35.80 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.01 Total: -0.72 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 1.09 Total: -0.61 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.60 Total: -48.25 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.38 Total: -7.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.37 -6.42 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260582428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.849 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds